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2019_SCN_bioreactor_t3_biofilm_scaffold_144631

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..607
DNA (606bp) protein (202aa)
RND transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B62A
RND efflux membrane fusion protein {ECO:0000313|EMBL:GAO53257.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane fusion protein
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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607..2085
DNA (1479bp) protein (493aa)
multidrug transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000365B3ED
Outer membrane component of multidrug efflux pump {ECO:0000313|EMBL:GAO53256.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
outer membrane efflux protein
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2129..2620)
DNA (492bp) protein (164aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMP6_BRAJP
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO56914.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2777..3841
DNA (1065bp) protein (355aa)
Vanillate O-demethylase oxygenase subunit {ECO:0000313|EMBL:GAO56915.1}; EC=1.14.13.82 {ECO:0000313|EMBL:GAO56915.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative iron-sulfur protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INF8_9SPHN
(2Fe-2S)-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3838..5208
DNA (1371bp) protein (457aa)
Glycine cleavage system T protein (Aminomethyltransferase) n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R617_9RHOB
Similar to vanillate/3-O-methylgallate O-demethylase {ECO:0000313|EMBL:GAO56916.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aminomethyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5364..6329
DNA (966bp) protein (322aa)
AraC family transcriptional regulator protein CadR n=2 Tax=Sphingomonadaceae RepID=T1YVA7_9SPHN
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO56917.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6401..7225)
DNA (825bp) protein (275aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G760_NOVAD
Dehydrogenases with different specificities {ECO:0000313|EMBL:GAO56918.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7278..8153)
DNA (876bp) protein (292aa)
Xylose isomerase domain-containing protein n=2 Tax=Pseudomonas syringae RepID=L7FVN5_PSESX
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:GAO56919.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
xylose isomerase domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8166..10370)
DNA (2205bp) protein (735aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBT6_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO56920.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10539..11912)
DNA (1374bp) protein (458aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSQ3_PARL1
Uncharacterized protein {ECO:0000313|EMBL:GAO56921.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11954..12193)
DNA (240bp) protein (80aa)
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex {ECO:0000313|EMBL:GAO56922.1}; EC=2.3.1.61 {ECO:0000313|EMBL:GAO56922.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN86_PSEUX
biotin/lipoyl attachment domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12190..13179)
DNA (990bp) protein (330aa)
pyruvate dehydrogenase (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN87_PSEUX
Acetoin dehydrogenase E1 component beta-subunit {ECO:0000313|EMBL:GAO56923.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13193..14215)
DNA (1023bp) protein (341aa)
pyruvate dehydrogenase (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN88_PSEUX
Acetoin dehydrogenase E1 component alpha-subunit {ECO:0000313|EMBL:GAO56924.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14446..15450
DNA (1005bp) protein (335aa)
GroES-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G759_NOVAD
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO56925.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molecular chaperone GroES
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15677..16843)
DNA (1167bp) protein (389aa)
Chemotaxis protein methyltransferase cheR {ECO:0000313|EMBL:GAO53255.1}; EC=2.1.1.80 {ECO:0000313|EMBL:GAO53255.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I673_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_144631_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16840..17034)
DNA (195bp) protein (65aa)
Chemotaxis response regulator protein-glutamate methylesterase cheB {ECO:0000313|EMBL:GAO53254.1}; EC=3.1.1.61 {ECO:0000313|EMBL:GAO53254.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CheB methylesterase (EC:3.1.1.61)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FCBD3D
Displaying 16 items

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