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2019_SCN_bioreactor_t3_biofilm_scaffold_147466

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1179
DNA (1179bp) protein (393aa)
TonB-dependent receptor n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XJC1_HIRBI
Uncharacterized protein {ECO:0000313|EMBL:GAO53289.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1289..2572
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TAN2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAO53288.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CitMHS family citrate/H+ symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2610..4013
DNA (1404bp) protein (468aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VLQ3_CAUST
DNA for 3-methylaspartate ammonia-lyase, glutamate mutase {ECO:0000313|EMBL:GAO53287.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4013..4321
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VLQ2_CAUST
Uncharacterized protein {ECO:0000313|EMBL:GAO53286.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..5578)
DNA (1209bp) protein (403aa)
Citrate synthase {ECO:0000313|EMBL:GAO53285.1}; EC=2.3.3.1 {ECO:0000313|EMBL:GAO53285.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Regulatory protein MerR n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IIW4_BEII9
regulatory protein MerR
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5649..6974)
DNA (1326bp) protein (442aa)
Permease of the major facilitator superfamily n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RH24_PHEZH
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO53284.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily permease
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7198..7644)
DNA (447bp) protein (149aa)
hypothetical protein n=2 Tax=Sphingobium xenophagum RepID=UPI0002DB06EC
Uncharacterized protein {ECO:0000313|EMBL:GAO53283.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DoxX family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7719..7982)
DNA (264bp) protein (88aa)
Membrane protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J827_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53282.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8158..8697
DNA (540bp) protein (180aa)
RNA polymerase sigma70 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49016
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:GAO53281.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RNA polymerase sigma factor
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8694..9335
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB82_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53280.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9412..9681
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003617B95
Uncharacterized protein {ECO:0000313|EMBL:GAO53279.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9752..10540
DNA (789bp) protein (263aa)
UPF0276 protein Swit_4400 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=Y4400_SPHWW
UPF0276 protein NMD1_00284 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10531..11310
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J821_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53277.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative uncharacterized protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11414..12742
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HHX1_9SPHN
Chloride channel protein {ECO:0000313|EMBL:GAO53276.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chloride channel protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12739..13056)
DNA (318bp) protein (106aa)
Ferredoxin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9B3_NOVAD
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:GAO53275.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ferredoxin
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13084..14508)
DNA (1425bp) protein (475aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO53274.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO53274.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aldehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G538_NOVAD
aldehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14516..15406)
DNA (891bp) protein (297aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G539_NOVAD
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:GAO53273.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15530..16333
DNA (804bp) protein (268aa)
Acetoacetate decarboxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G540_NOVAD
Acetoacetate decarboxylase {ECO:0000313|EMBL:GAO53272.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetoacetate decarboxylase
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16790..19558
DNA (2769bp) protein (923aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK49_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67407.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
TonB-dependent receptor-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19545..21089
DNA (1545bp) protein (515aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK48_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67406.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21157..22617
DNA (1461bp) protein (487aa)
Putative dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK47_9SPHN
putative dioxygenase
Putative dioxygenase {ECO:0000313|EMBL:BAK67405.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22607..23935
DNA (1329bp) protein (443aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK46_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK67404.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23932..24789
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK45_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67403.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24817..25623
DNA (807bp) protein (269aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:BAK67402.1}; EC=3.1.1.24 {ECO:0000313|EMBL:BAK67402.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Beta-ketoadipate enol-lactone hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK44_9SPHN
beta-ketoadipate enol-lactone hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25608..26126)
DNA (519bp) protein (173aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK43_9SPHN
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK67401.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26239..26787
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK42_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67400.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26787..27239
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK41_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67399.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27272..28525)
DNA (1254bp) protein (418aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO53271.1}; EC=1.2.1.60 {ECO:0000313|EMBL:GAO53271.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G527_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28644..29939)
DNA (1296bp) protein (432aa)
glutamate--ammonia ligase (EC:6.3.1.2)
Glutamate--ammonia ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G528_NOVAD
Glutamine synthetase family protein {ECO:0000313|EMBL:GAO53270.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_147466_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29983..31251)
DNA (1269bp) protein (423aa)
Cytochrome P450 family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G529_NOVAD
Cytochrome P450 {ECO:0000313|EMBL:GAO53269.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome P450 family protein
Displaying items 1-30 of 42 in total

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