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2019_SCN_bioreactor_t3_biofilm_scaffold_173703

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7..468)
DNA (462bp) protein (154aa)
universal stress protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3E668
Universal stress family protein {ECO:0000313|EMBL:GAO56137.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

641..1933
DNA (1293bp) protein (431aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydrolipoamide acetyltransferase, long form (EC:2.3.1.61)
Dihydrolipoamide acetyltransferase, long form n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1941..2360
DNA (420bp) protein (140aa)
Acyl-CoA hydrolase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9W5_9SPHN
Cytosolic long-chain acyl-CoA thioester hydrolase family protein {ECO:0000313|EMBL:GAO56135.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acyl-CoA thioesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2353..2724
DNA (372bp) protein (124aa)
Cytosolic long-chain acyl-CoA thioester hydrolase family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC80_9SPHN
Acyl-CoA thioesterase yciA {ECO:0000313|EMBL:GAO56134.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytosolic long-chain acyl-CoA thioester hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2727..4139
DNA (1413bp) protein (471aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4164..5339
DNA (1176bp) protein (392aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I573_9SPHN
NAD(FAD)-utilizing dehydrogenases {ECO:0000313|EMBL:GAO56132.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative flavoprotein
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5435..7084
DNA (1650bp) protein (550aa)
Choline dehydrogenase {ECO:0000313|EMBL:GAO56131.1}; EC=1.1.99.1 {ECO:0000313|EMBL:GAO56131.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glucose-methanol-choline oxidoreductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEZ9_NOVAD
choline dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_8
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7134..7787)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037EBC3A
Cytochrome c4 {ECO:0000313|EMBL:EHP44306.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
cytochrome C4
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_9
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7787..8725)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037DD318
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:KJE52375.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_10
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8738..9193)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003639014
Uncharacterized protein {ECO:0000313|EMBL:EYS91618.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_11
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9199..10467)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000372D14D
pcaK2; 4-hydroxybenzoate transporter PcaK
4-hydroxybenzoate transporter PcaK {ECO:0000313|EMBL:AEI83038.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10418..11677)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000379218C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI83037.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_13
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11911..12516
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036788D2
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AEI83040.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_173703_14
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12508..13365)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003808F98
Uncharacterized protein {ECO:0000313|EMBL:EYS91627.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
transcriptional regulator
Displaying 14 items

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