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2019_SCN_bioreactor_t3_biofilm_scaffold_166583

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1429
DNA (1428bp) protein (476aa)
Twin-arginine translocation pathway signal n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX49_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56713.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
twin-arginine translocation pathway signal
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1467..1949)
DNA (483bp) protein (161aa)
glutathione-dependent formaldehyde-activating enzyme family protein (EC:4.4.1.22)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3APK7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56714.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2003..2443)
DNA (441bp) protein (147aa)
Glutathione S-transferase-related transmembrane protein {ECO:0000313|EMBL:GAO56715.1}; EC=2.5.1.18 {ECO:0000313|EMBL:GAO56715.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4A1_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2455..3117)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IQ71_9SPHN
Glutathione S-transferase, N-terminal domain {ECO:0000313|EMBL:GAO56716.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3119..3595)
DNA (477bp) protein (159aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036CD3B3
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:GAO56717.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-demethylubiquinone-9 3-methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3598..4386)
DNA (789bp) protein (263aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Novosphingobium RepID=F6IFW2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56718.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyoxalase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4389..4757)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ATI6_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:GAO56719.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4807..5226)
DNA (420bp) protein (140aa)
Glyoxalase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBY1_9SPHN
Glyoxalase family protein {ECO:0000313|EMBL:GAO56720.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glyoxalase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5223..5870)
DNA (648bp) protein (216aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9V7_9RHIZ
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO56721.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
regulatory protein, TetR family
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5962..6603)
DNA (642bp) protein (214aa)
Glutathione S-transferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGU0_PHEZH
Glutathione S-transferase family protein {ECO:0000313|EMBL:GAO56722.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6701..7693
DNA (993bp) protein (331aa)
Aerobic cobaltochelatase cobS subunit {ECO:0000313|EMBL:GAO56723.1}; EC=6.6.1.2 {ECO:0000313|EMBL:GAO56723.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hydrogenobyrinic acid a,c-diamide cobaltochelatase (EC:6.6.1.2)
aerobic cobaltochelatase subunit CobS n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3674D
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7891..8784)
DNA (894bp) protein (298aa)
NADH oxidase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035DB4FC
Possible NADH oxidoreductase {ECO:0000313|EMBL:GAO56724.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alcohol dehydrogenase GroES
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8794..9546)
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G494_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9584..10489)
DNA (906bp) protein (302aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Methionyl-tRNA formyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=FMT_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10540..11136
DNA (597bp) protein (199aa)
recombinase RecR n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002ED171C
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
recombination protein RecR
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11246..11815
DNA (570bp) protein (190aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Peptide deformylase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HLT7_9SPHN
peptide deformylase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11896..13443
DNA (1548bp) protein (516aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G490_NOVAD
DNA recombination protein rmuC {ECO:0000313|EMBL:GAO56729.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13445..14221
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G489_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56730.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14218..14649)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G488_NOVAD
Heat shock protein {ECO:0000313|EMBL:GAO56731.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14706..15365)
DNA (660bp) protein (220aa)
RNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62254
Uncharacterized protein {ECO:0000313|EMBL:GAO56732.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA/rRNA methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15389..15733)
DNA (345bp) protein (115aa)
HPr kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3E399
Phosphocarrier protein, nitrogen regulation associated {ECO:0000313|EMBL:GAO56733.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HPrNtr
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15737..16141)
DNA (405bp) protein (135aa)
PTS system fructose subfamily IIA component n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC70_9SPHN
PTS system permease (IIAMan), nitrogen regulatory IIA protein {ECO:0000313|EMBL:GAO56734.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PTS system fructose subfamily IIA component
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16265..17197)
DNA (933bp) protein (311aa)
UPF0042 nucleotide-binding protein Saro_2904 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Y2904_NOVAD
Nucleotide-binding protein NMD1_03904 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17255..17692)
DNA (438bp) protein (146aa)
Hpr(Ser) kinase/phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G483_NOVAD
HPr kinase/phosphorylase {ECO:0000313|EMBL:GAO56737.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HPr kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17689..19311)
DNA (1623bp) protein (541aa)
histidine kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B597AA
Sensor histidine kinase chvG {ECO:0000313|EMBL:GAO56738.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
periplasmic sensor signal transduction histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_166583_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19280..19354)
DNA (75bp) protein (25aa)
DNA-binding response regulator chvI {ECO:0000313|EMBL:GAO56739.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 26 items

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