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2019_SCN_bioreactor_t3_biofilm_scaffold_168061

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..738
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA71_9SPHN
S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase {ECO:0000313|EMBL:GAO55707.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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735..1400
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GTL6_9SPHN
Mlr1575 protein {ECO:0000313|EMBL:GAO55706.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1480..1908
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7E4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55705.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1940..2368
DNA (429bp) protein (143aa)
UPI0003D02FED related cluster n=1 Tax=unknown RepID=UPI0003D02FED
Uncharacterized protein {ECO:0000313|EMBL:GAO55704.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
membrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2373..3578)
DNA (1206bp) protein (402aa)
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7E6_NOVAD
23S rRNA (Uracil-5-)-methyltransferase rumA {ECO:0000313|EMBL:GAO55703.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
(Uracil-5)-methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3575..4984)
DNA (1410bp) protein (470aa)
YjeF-related protein-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7E7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55702.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5025..6890)
DNA (1866bp) protein (622aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZA76_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7012..7734)
DNA (723bp) protein (241aa)
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:GAO55700.1}; EC=3.5.1.68 {ECO:0000313|EMBL:GAO55700.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
N-formylglutamate amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7F0_NOVAD
N-formylglutamate amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7731..8549)
DNA (819bp) protein (273aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIV6_9SPHN
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_10
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8552..8983)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NA14_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:EZP84626.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9047..10696)
DNA (1650bp) protein (550aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:GAO55698.1}; EC=1.5.5.1 {ECO:0000313|EMBL:GAO55698.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7F2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11073..11852
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA80_9SPHN
Uracil-DNA glycosylase {ECO:0000313|EMBL:GAO55697.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11859..13640
DNA (1782bp) protein (594aa)
lytic murein transglycosylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43210
Soluble lytic murein transglycosylase and related regulatory proteins {ECO:0000313|EMBL:GAO55696.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic transglycosylase catalytic subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13630..14157
DNA (528bp) protein (176aa)
Molybdopterin binding domain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7F5_NOVAD
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molybdopterin binding domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_168061_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14221..14487
DNA (267bp) protein (89aa)
Radical SAM n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7G0_NOVAD
Radical SAM domain protein {ECO:0000313|EMBL:GAO55694.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
radical SAM family protein
Displaying 15 items

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