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2019_SCN_bioreactor_t3_biofilm_scaffold_161089

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..500
DNA (498bp) protein (166aa)
type II secretion system protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3FE8C
Type II/IV secretion system protein tadC, associated with Flp pilus assembly {ECO:0000313|EMBL:GAO55147.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
type II secretion system protein
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(618..1400)
DNA (783bp) protein (261aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F4_NOVAD
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:GAO55146.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fumarylacetoacetate (FAA) hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1397..1855)
DNA (459bp) protein (153aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F5_NOVAD
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO55145.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2015..2653)
DNA (639bp) protein (213aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F6_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO55144.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2650..3522)
DNA (873bp) protein (291aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO55143.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAO55143.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3582..4367)
DNA (786bp) protein (262aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO55142.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO55142.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F8_NOVAD
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4395..5567)
DNA (1173bp) protein (391aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA C-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F9_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55141.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_161089_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5715..6635
DNA (921bp) protein (307aa)
Thiamine-monophosphate kinase {ECO:0000313|EMBL:GAO55140.1}; EC=2.7.4.16 {ECO:0000313|EMBL:GAO55140.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDG9_9SPHN
Displaying 8 items

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