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2019_SCN_bioreactor_t3_biofilm_scaffold_198070

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
Sec-independent protein translocase protein TatA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD92_9SPHN
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
twin arginine-targeting protein translocase
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178..855)
DNA (678bp) protein (226aa)
Condensin subunit ScpB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD93_9SPHN
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
condensin subunit ScpB
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(852..1670)
DNA (819bp) protein (273aa)
Condensin subunit ScpA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9D6_NOVAD
Segregation and condensation protein A {ECO:0000313|EMBL:GAO55164.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
condensin subunit ScpA
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1670..2710)
DNA (1041bp) protein (347aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00024542}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00024542};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-N-acetylhexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9D7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2780..3550)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9D8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55162.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3563..5311)
DNA (1749bp) protein (583aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDF1_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5440..6126)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5127D
Uncharacterized protein {ECO:0000313|EMBL:GAO55160.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6283..7278
DNA (996bp) protein (332aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B78C13
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7291..8268
DNA (978bp) protein (326aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9E2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8265..8696
DNA (432bp) protein (144aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rnhA; ribonuclease H (EC:3.1.26.4)
ribonuclease H n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6684A
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8735..8917)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY17_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55156.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9045..10163)
DNA (1119bp) protein (373aa)
FAD dependent oxidoreductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9E5_NOVAD
Glycine oxidase {ECO:0000313|EMBL:GAO55155.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD dependent oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10201..11163)
DNA (963bp) protein (321aa)
Lysophospholipase L2 {ECO:0000313|EMBL:GAO55154.1}; EC=3.1.1.5 {ECO:0000313|EMBL:GAO55154.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lysophospholipase L2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9E6_NOVAD
lysophospholipase L2
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11257..11745
DNA (489bp) protein (163aa)
Type IV prepilin peptidase, cpaA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDF8_9SPHN
Type IV prepilin peptidase tadV/cpaA {ECO:0000313|EMBL:GAO55153.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase A24A, prepilin type IV
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11809..12840
DNA (1032bp) protein (344aa)
Flp pilus assembly CpaB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9E8_NOVAD
Flp pilus assembly protein rcpC/cpaB {ECO:0000313|EMBL:GAO55152.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Flp pilus assembly CpaB
2019_SCN_bioreactor_t3_biofilm_scaffold_198070_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12842..13819
DNA (978bp) protein (326aa)
Type II and III secretion system protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9E9_NOVAD
Type II/IV secretion system secretin rcpA/cpaC, associated with Flp pilus assembly {ECO:0000313|EMBL:GAO55151.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
type II and III secretion system protein
Displaying 16 items

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