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2019_SCN_bioreactor_t3_biofilm_scaffold_140927

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..684
DNA (684bp) protein (228aa)
AMP-binding protein (EC:2.3.1.86)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57028.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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763..2406
DNA (1644bp) protein (548aa)
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN48_9SPHN
Chlorogenate esterase {ECO:0000313|EMBL:GAO57029.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative esterase
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2670..3746)
DNA (1077bp) protein (359aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium xenophagum RepID=UPI00031B8CD4
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO57031.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3884..4555
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Burkholderia thailandensis RepID=I6A862_BURTH
Uncharacterized protein {ECO:0000313|EMBL:GAO57032.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4588..5784
DNA (1197bp) protein (399aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetylornithine aminotransferase (EC:2.6.1.11)
acetylornithine aminotransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A2BA
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5790..6800
DNA (1011bp) protein (337aa)
Arginine N-succinyltransferase {ECO:0000313|EMBL:GAO57034.1}; EC=2.3.1.109 {ECO:0000313|EMBL:GAO57034.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
arginine succinyltransferase (EC:2.3.1.109)
Arginine succinyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB85_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6812..8221
DNA (1410bp) protein (470aa)
Succinylglutamic semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO57035.1}; EC=1.2.1.71 {ECO:0000313|EMBL:GAO57035.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UPI0003D5C297 related cluster n=1 Tax=unknown RepID=UPI0003D5C297
astD; succinylglutamate-semialdehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8357..9970
DNA (1614bp) protein (538aa)
Tetratricopeptide TPR_4 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4E5_SPHWW
Signal transduction response regulator {ECO:0000313|EMBL:GAO57036.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tetratricopeptide domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9972..10451
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K1Y6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO57037.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10533..11945
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4E7_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO57038.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11976..12629)
DNA (654bp) protein (218aa)
cAMP-binding protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L6T3_9SPHN
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases {ECO:0000313|EMBL:GAO57039.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cyclic nucleotide-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_140927_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13052..13483
DNA (432bp) protein (144aa)
Long-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO57040.1}; EC=1.3.8.8 {ECO:0000313|EMBL:GAO57040.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU51_SPHAL
acyl-CoA dehydrogenase-like protein
Displaying 12 items

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