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2019_SCN_bioreactor_t3_biofilm_scaffold_141629

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..816
DNA (816bp) protein (272aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBT2_9SPHN
tRNA (guanine-N7)-methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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899..1426
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4CB4D
Uncharacterized protein {ECO:0000313|EMBL:GAO54424.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1463..3265)
DNA (1803bp) protein (601aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:GAO54423.1}; EC=6.2.1.3 {ECO:0000313|EMBL:GAO54423.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBY3_NOVAD
AMP-dependent synthetase/ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3388..4482)
DNA (1095bp) protein (365aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:GAO54422.1}; EC=2.3.2.2 {ECO:0000313|EMBL:GAO54422.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gamma-glutamyltransferase 1 (EC:2.3.2.2)
Gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBY2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5091..6125)
DNA (1035bp) protein (345aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00230973};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
diguanylate cyclase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B79A87
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6972..8468
DNA (1497bp) protein (499aa)
cysteine desulfarase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6B766
Iron-sulfur cluster assembly protein sufB {ECO:0000313|EMBL:GAO54418.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteine desulfurase activator complex subunit SufB
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8465..8968
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBX8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54417.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_141629_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8971..9711
DNA (741bp) protein (247aa)
transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B35F8A
Iron-sulfur cluster assembly ATPase protein sufC {ECO:0000313|EMBL:GAO54416.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FeS assembly ATPase SufC
Displaying 8 items

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