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2019_SCN_bioreactor_t3_biofilm_scaffold_143258

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_1
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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136..474
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GEB1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02106.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

647..1366
DNA (720bp) protein (240aa)
Isochorismatase {ECO:0000313|EMBL:GAO56413.1}; EC=3.3.2.1 {ECO:0000313|EMBL:GAO56413.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000376437B
isochorismatase
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_3
unknown

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comp(1646..1897)
DNA (252bp) protein (84aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_143258_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2072..2857)
DNA (786bp) protein (262aa)
transcriptional initiation protein Tat n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237E821
Uncharacterized protein {ECO:0000313|EMBL:GAO56414.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2868..4484)
DNA (1617bp) protein (539aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:GAO56415.1}; EC=3.4.16.4 {ECO:0000313|EMBL:GAO56415.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Beta-lactamase n=1 Tax=Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7 str. 1121 RepID=V1H4Z8_SALCE
D-alanyl-D-alanine carboxypeptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4633..5631)
DNA (999bp) protein (333aa)
Tellurite resistance protein tehA n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1V9_JANMA
Tellurite resistance protein tehA {ECO:0000313|EMBL:GAO56416.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tehA; potassium-tellurite ethidium and proflavin transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5982..6341)
DNA (360bp) protein (120aa)
Response regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z466_9SPHN
Response regulator {ECO:0000313|EMBL:EGD60476.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
response regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_8
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6412..7302)
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4CE4F
LysR family transcriptional regulator {ECO:0000313|EMBL:EMS44392.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7422..8177
DNA (756bp) protein (252aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B40B08
Uncharacterized protein {ECO:0000313|EMBL:EJL28928.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8254..8670
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003681742
hypothetical protein
Conserved hypothethical protein, NTF2-like domain {ECO:0000313|EMBL:CDN57942.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9028..12447
DNA (3420bp) protein (1140aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GMP6_9SPHN
Signal transduction histidine kinase {ECO:0000313|EMBL:GAO53252.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12452..13282
DNA (831bp) protein (277aa)
Chemotaxis protein methyltransferase cheR {ECO:0000313|EMBL:GAO53253.1}; EC=2.1.1.80 {ECO:0000313|EMBL:GAO53253.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MCP methyltransferase, CheR-type n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGP6_SPHWW
chemotaxis protein CheR
2019_SCN_bioreactor_t3_biofilm_scaffold_143258_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13279..13617
DNA (339bp) protein (113aa)
Chemotaxis response regulator protein-glutamate methylesterase cheB {ECO:0000313|EMBL:GAO53254.1}; EC=3.1.1.61 {ECO:0000313|EMBL:GAO53254.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chemotaxis protein CheB (EC:3.1.1.61)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00037B2768
Displaying 13 items

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