ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_261252

Search features with annotation key words

Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_261252_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..167
DNA (165bp) protein (55aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RNAse E (EC:3.1.4.-)
Ribonuclease E n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VD27_SPHWW
2019_SCN_bioreactor_t3_biofilm_scaffold_261252_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241..873)
DNA (633bp) protein (211aa)
Generic methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5W7_NOVAD
SAM-dependent methyltransferase PA0798 {ECO:0000313|EMBL:GAO55443.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
generic methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_261252_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

920..1894
DNA (975bp) protein (325aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.5.1)
Succinate dehydrogenase subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5W4_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_261252_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1902..2357
DNA (456bp) protein (152aa)
Phenylacetic acid degradation-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5W3_NOVAD
Phenylacetic acid degradation protein paaD, thioesterase {ECO:0000313|EMBL:GAO55440.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phenylacetic acid degradation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_261252_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2354..3319
DNA (966bp) protein (322aa)
AFG1 family ATPase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6EB16
ATPase component bioM of energizing module of biotin ECF transporter {ECO:0000313|EMBL:GAO55439.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AFG1-like ATPase
Displaying 5 items

View Taxonomy