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2019_SCN_bioreactor_t3_biofilm_scaffold_186755

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..996)
DNA (996bp) protein (332aa)
Phosphate transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA35_NOVAD
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:GAO54605.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphate transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1020..1667)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA36_NOVAD
Phosphate transport regulator {ECO:0000313|EMBL:GAO54606.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1962..2792
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54607.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3085..4059)
DNA (975bp) protein (325aa)
Mg2+ transporter protein, CorA-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA37_NOVAD
Magnesium and cobalt transport protein corA {ECO:0000313|EMBL:GAO54608.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CorA-like Mg2+ transporter protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4220..5767
DNA (1548bp) protein (516aa)
Flavin-containing monooxygenase FMO n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA38_NOVAD
Monooxygenase of flavin-binding family {ECO:0000313|EMBL:GAO54609.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flavin-containing monooxygenase FMO
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5859..6620
DNA (762bp) protein (254aa)
molybdopterin-binding protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0003185661
Molybdopterin binding motif, cinA N-terminal domain {ECO:0000313|EMBL:GAO54610.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molybdopterin binding domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6617..7192
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA42_NOVAD
Y4mC gene in pNGR234a homolog {ECO:0000313|EMBL:GAO54611.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7176..8513)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B614CF
Uncharacterized protein {ECO:0000313|EMBL:GAO54612.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8655..8870)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HAT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54613.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9101..9802)
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL1_NOVAD
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplA; 50S ribosomal protein L1
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9807..10238)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL11_NOVAD
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplK; 50S ribosomal protein L11
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10414..11739)
DNA (1326bp) protein (442aa)
Aminoacyl-histidine dipeptidase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU45_9SPHN
Peptidase T {ECO:0000313|EMBL:GAO54616.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M20
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11810..12346)
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA46_NOVAD
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transcription antitermination protein nusG
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12393..12587)
DNA (195bp) protein (65aa)
preprotein translocase subunit SecE n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3A76B
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein translocase subunit secE/sec61 gamma
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_15
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13022..13651)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5F7BE
Uncharacterised protein {ECO:0000313|EMBL:CRD92131.1}; Uncharacterized protein {ECO:0000313|EMBL:CRI72257.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13663..14340)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA53_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25270.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14357..14767)
DNA (411bp) protein (137aa)
NADH dehydrogenase (EC:1.6.99.3)
NADH:ubiquinone oxidoreductase 17.2 kD subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA54_NOVAD
NADH:ubiquinone oxidoreductase 17.2 kD subunit {ECO:0000313|EMBL:GAO54620.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14928..15431)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52B2C
Uncharacterized protein {ECO:0000313|EMBL:GAO54621.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15415..15918)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA56_NOVAD
Regulatory protein recX {ECO:0000313|EMBL:GAO54622.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17591
DNA (1455bp) protein (485aa)
acyl-CoA synthetase (EC:2.3.1.86)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA57_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54623.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17598..17894
DNA (297bp) protein (99aa)
acyl-CoA synthetase (EC:2.3.1.86)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA57_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54623.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_22
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17974..18276)
DNA (303bp) protein (101aa)
Translation repressor RelE n=1 Tax=Pseudomonas aeruginosa HB13 RepID=U1F7J3_PSEAI
Translation repressor RelE {ECO:0000313|EMBL:EXS69678.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
RelE/StbE family addiction module toxin
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_23
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18273..18560)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XYU3_PSEMY
Uncharacterized protein {ECO:0000313|EMBL:EXS69679.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
yacA2; hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18642..19265)
DNA (624bp) protein (208aa)
Putative ParB-like nuclease n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU43_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54624.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19268..20866)
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SMY0_9SPHN
Sulfate permease family protein {ECO:0000313|EMBL:GAO54625.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21071..22276
DNA (1206bp) protein (402aa)
Toxic anion resistance n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G429_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54626.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
toxic anion resistance
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22466..23260
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G430_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54627.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23260..23565
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A887
Uncharacterized protein {ECO:0000313|EMBL:GAO54628.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_186755_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23745..23915)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47EA3
Possible HAMP domain {ECO:0000313|EMBL:GAO54629.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 29 items

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