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2019_SCN_bioreactor_t3_biofilm_scaffold_271097

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..143)
DNA (141bp) protein (47aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
D-alanine--D-alanine ligase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FBQ7_9RHIZ
ddlB; D-alanine--D-alanine ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(183..1868)
DNA (1686bp) protein (562aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Glycine dehydrogenase (Decarboxylating) beta subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G780_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1865..3223)
DNA (1359bp) protein (453aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GCSPA_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3228..3449)
DNA (222bp) protein (74aa)
glycine cleavage system protein H n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B357AA
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycine cleavage system protein H
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3525..4709)
DNA (1185bp) protein (395aa)
Aminomethyltransferase {ECO:0000313|EMBL:GAO56016.1}; EC=2.1.2.10 {ECO:0000313|EMBL:GAO56016.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
Aminomethyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G783_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5214..5888)
DNA (675bp) protein (225aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G784_NOVAD
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:GAO56015.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD-dependent epimerase/dehydratase
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5881..7053)
DNA (1173bp) protein (391aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G785_NOVAD
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
deoxyguanosinetriphosphate triphosphohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7063..7755)
DNA (693bp) protein (231aa)
Aspartate racemase {ECO:0000313|EMBL:GAO56013.1}; EC=5.1.1.13 {ECO:0000313|EMBL:GAO56013.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aspartate racemase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B685DD
aspartate racemase
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7885..8211)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G787_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56012.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8225..9646)
DNA (1422bp) protein (474aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G788_NOVAD
NAD(P) transhydrogenase subunit beta
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9646..9930)
DNA (285bp) protein (95aa)
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:GAO56010.1}; EC=1.6.1.2 {ECO:0000313|EMBL:GAO56010.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G789_NOVAD
NAD(P) transhydrogenase subunit alpha transmembrane protein
2019_SCN_bioreactor_t3_biofilm_scaffold_271097_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9934..10296)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000360E3ED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70314.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 12 items

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