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2019_SCN_bioreactor_t3_biofilm_scaffold_218117

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..608)
DNA (606bp) protein (202aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I1_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(632..2188)
DNA (1557bp) protein (519aa)
Peptidase M28 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I2_NOVAD
Peptidase M20/M25/M40 family protein {ECO:0000313|EMBL:GAO55666.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M28
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2370..3263
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I4_NOVAD
YpfJ protein, zinc metalloprotease superfamily {ECO:0000313|EMBL:GAO55665.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3322..3981
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55664.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4057..5439)
DNA (1383bp) protein (461aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
Succinate dehydrogenase subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5443..5826)
DNA (384bp) protein (128aa)
succinate dehydrogenase subunit D (EC:1.3.5.1)
succinate dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002FB4981
Succinate dehydrogenase hydrophobic membrane anchor protein {ECO:0000313|EMBL:GAO55662.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5862..6287)
DNA (426bp) protein (142aa)
succinate dehydrogenase subunit C (EC:1.3.5.1)
Succinate dehydrogenase subunit C n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I9_NOVAD
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:GAO55661.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_218117_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6450..6665
DNA (216bp) protein (72aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO55660.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO55660.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain alcohol dehydrogenase-like protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHB3_PHEZH
3-oxoacyl-ACP reductase
Displaying 8 items

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