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2019_SCN_bioreactor_t3_biofilm_scaffold_211075

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..477
DNA (477bp) protein (159aa)
response regulator receiver protein n=1 Tax=Sphingomonas elodea RepID=UPI00026313B6
Response regulator receiver protein {ECO:0000313|EMBL:GAO56106.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
response regulator receiver protein
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(491..2017)
DNA (1527bp) protein (509aa)
two component sensor kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026313B5
Signal transduction histidine kinase regulating C4-dicarboxylate transport system {ECO:0000313|EMBL:GAO56105.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component sensor kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2249..2818)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B453F9
Uncharacterized protein {ECO:0000313|EMBL:GAO56104.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3192..3569
DNA (378bp) protein (126aa)
Lytic murein transglycosylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y9_NOVAD
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:GAO56103.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic murein transglycosylase
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3679..3975
DNA (297bp) protein (99aa)
Lytic murein transglycosylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y9_NOVAD
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:GAO56103.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic murein transglycosylase
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3959..5062
DNA (1104bp) protein (368aa)
Sporulation related protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9X5_9SPHN
Rare lipoprotein A {ECO:0000313|EMBL:GAO56102.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sporulation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5130..6275
DNA (1146bp) protein (382aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:GAO56101.1}; EC=3.4.16.4 {ECO:0000313|EMBL:GAO56101.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9X6_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6272..6919
DNA (648bp) protein (216aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Z2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6916..7896
DNA (981bp) protein (327aa)
DNA polymerase III delta prime subunit {ECO:0000313|EMBL:GAO56099.1}; EC=2.7.7.7 {ECO:0000313|EMBL:GAO56099.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Z3_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7930..9453
DNA (1524bp) protein (508aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
methionyl-tRNA synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4A060
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9453..10229
DNA (777bp) protein (259aa)
TatD-related deoxyribonuclease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Z5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56097.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TatD-related deoxyribonuclease
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10240..11007
DNA (768bp) protein (256aa)
beta-lactamase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3006A
Metal-dependent hydrolases of the beta-lactamase superfamily I {ECO:0000313|EMBL:GAO56096.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11027..11191
DNA (165bp) protein (55aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56095.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_211075_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11290..11988)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFD7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56094.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 14 items

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