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2019_SCN_bioreactor_t3_biofilm_scaffold_214319

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1161
DNA (1161bp) protein (387aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:GAO56874.1}; EC=6.5.1.1 {ECO:0000313|EMBL:GAO56874.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lig; ATP-dependent DNA ligase (EC:6.5.1.1)
DNA ligase D n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0ICQ9_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1166..2224)
DNA (1059bp) protein (353aa)
DNA topoisomerase IB {ECO:0000313|EMBL:GAO56873.1}; EC=5.99.1.2 {ECO:0000313|EMBL:GAO56873.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA topoisomerase (EC:5.99.1.2)
Uncharacterized protein (Fragment) n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZM6_9PROT
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2411..2698
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z632_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:GAO56872.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2833..3204)
DNA (372bp) protein (124aa)
Putative response regulator receiver (CheY-like protein) n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S7Q1_9BRAD
Two-component system regulatory protein {ECO:0000313|EMBL:GAO56871.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
response regulator receiver
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3627..4757
DNA (1131bp) protein (377aa)
Valine--pyruvate aminotransferase {ECO:0000313|EMBL:GAO56870.1}; EC=2.6.1.66 {ECO:0000313|EMBL:GAO56870.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V912_SPHWW
2019_SCN_bioreactor_t3_biofilm_scaffold_214319_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4747..5394)
DNA (648bp) protein (216aa)
Major facilitator superfamily MFS_1 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y4N8_9PROT
L-proline/glycine betaine transporter proP {ECO:0000313|EMBL:GAO56869.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MFS transporter
Displaying 6 items

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