ggKbase home page

2019_SCN_bioreactor_t3_planktonic_scaffold_55203

Search features with annotation key words

Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_1
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..1079)
-----------------
DNA (912bp)
protein (304aa)
Protease n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3E5_AZOS1
protease
Protease {ECO:0000313|EMBL:BAI74684.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_2
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1093..2091)
-----------------
DNA (999bp)
protein (333aa)
Protease n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3E4_AZOS1
protease
Protease {ECO:0000313|EMBL:BAI74683.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2098..2775)
-----------------
DNA (678bp)
protein (226aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3E3_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74682.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_4
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2877..3323)
-----------------
DNA (447bp)
protein (149aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXZ2_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KJR61719.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_5
unknown

Not on your lists

3588..3740
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

2019_SCN_bioreactor_t3_planktonic_scaffold_55203_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3751..4653)
-----------------
DNA (903bp)
protein (301aa)
Putative oxidoreductase, NAD(P)-binding domain n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDY2_AZOL4
putative oxidoreductase, NAD(P)-binding domain
Putative oxidoreductase, NAD(P)-binding domain {ECO:0000313|EMBL:CBS89822.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4764..5276)
-----------------
DNA (513bp)
protein (171aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDY1_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS89821.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5386..5889)
-----------------
DNA (504bp)
protein (168aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AX18_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD02427.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5889..6152)
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDY0_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS89820.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..6957)
-----------------
DNA (717bp)
protein (239aa)
Nitrite and nitric oxide reductase transcriptional regulator (Crp/Fnr family) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD29_AZOL4
nnrR; Nitrite and nitric oxide reductase transcriptional regulator (Crp/Fnr family)
Nitrite and nitric oxide reductase transcriptional regulator (Crp/Fnr family) {ECO:0000313|EMBL:CBS89819.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7098..8306
-----------------
DNA (1209bp)
protein (403aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX9_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS89818.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8368..9369)
-----------------
DNA (1002bp)
protein (334aa)
Glutathione S-transferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3D7_AZOS1
ecm4; glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:BAI74676.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9458..10042)
-----------------
DNA (585bp)
protein (195aa)
Protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3D6_AZOS1
protein
Protein {ECO:0000313|EMBL:BAI74675.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10087..10983)
-----------------
DNA (897bp)
protein (299aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3D5_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74674.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_15
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11059..12018
-----------------
DNA (960bp)
protein (320aa)
Transcriptional regulator, LysR family n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD26_AZOL4
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CBS89815.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_16
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12084..13943)
-----------------
DNA (1860bp)
protein (620aa)
Putative type III restriction enzyme, res subunit n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX8_AZOL4
Putative type III restriction enzyme, res subunit
Putative type III restriction enzyme, res subunit {ECO:0000313|EMBL:CBS89814.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_17
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14244..15302
-----------------
DNA (1059bp)
protein (353aa)
Transcriptional regulator, LacI family n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX7_AZOL4
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CBS89813.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_18
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15334..16791
-----------------
DNA (1458bp)
protein (486aa)
Xylulose kinase {ECO:0000313|EMBL:CBS89812.1}; EC=2.7.1.17 {ECO:0000313|EMBL:CBS89812.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Xylulose kinase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX6_AZOL4
xylB; Xylulose kinase
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_19
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16788..18110
-----------------
DNA (1323bp)
protein (441aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Xylose isomerase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD25_AZOL4
xylA; D-xylose isomerase
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18358..19428
-----------------
DNA (1071bp)
protein (357aa)
D-xylose transport system substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3D0_AZOS1
xylF; D-xylose transport system substrate-binding protein
D-xylose transport system substrate-binding protein {ECO:0000313|EMBL:BAI74669.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19428..20750
-----------------
DNA (1323bp)
protein (441aa)
D-xylose ABC transporter permease component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX5_AZOL4
xylH; D-xylose ABC transporter; permease component
D-xylose ABC transporter permease component {ECO:0000313|EMBL:CBS89809.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_22
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20747..21559
-----------------
DNA (813bp)
protein (271aa)
D-xylose ABC transporter, ATP-binding component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX4_AZOL4
xylG; D-xylose ABC transporter, ATP-binding component
D-xylose ABC transporter, ATP-binding component {ECO:0000313|EMBL:CBS89808.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_23
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21585..22724)
-----------------
DNA (1140bp)
protein (380aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8J3_9PROT
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:EWY37259.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22760..24196)
-----------------
DNA (1437bp)
protein (479aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1X6_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:KJB94839.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_25
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24570..25742)
-----------------
DNA (1173bp)
protein (391aa)
Putative plasmid replication protein RepA n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD23_AZOL4
putative plasmid replication protein RepA
Putative plasmid replication protein RepA {ECO:0000313|EMBL:CBS89806.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_26
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26468..27331
-----------------
DNA (864bp)
protein (288aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD22_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS89805.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_27
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27328..28017
-----------------
DNA (690bp)
protein (230aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZD21_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS89804.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_28
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28089..29165
-----------------
DNA (1077bp)
protein (359aa)
UV damage repair endonuclease n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX2_AZOL4
UV damage repair endonuclease
UV damage repair endonuclease {ECO:0000313|EMBL:CBS89803.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_29
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29251..30834
-----------------
DNA (1584bp)
protein (528aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Sensor protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3C4_AZOS1
sensor protein
2019_SCN_bioreactor_t3_planktonic_scaffold_55203_30
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30824..31522
-----------------
DNA (699bp)
protein (233aa)
Two-component response regulator, LuxR/FixJ family n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDX0_AZOL4
Two-component response regulator, LuxR/FixJ family
Two-component response regulator, LuxR/FixJ family {ECO:0000313|EMBL:CBS89801.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Displaying items 1-30 of 156 in total

View Taxonomy