ggKbase home page
Advanced Search
Search Help

2019_SCN_bioreactor_t3_planktonic_scaffold_5545_6

Organism: 2019_SCN_bioreactor_t3_planktonic_Azospirillum_lipoferum_68_106

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(7750..11943)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.1
  • Coverage: 1397.0
  • Bit_score: 2720
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NS31_AZOS1 similarity UNIREF
DB: UNIREF100
  • Identity: 99.1
  • Coverage: 1397.0
  • Bit_score: 2720
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 99.1
  • Coverage: 1397.0
  • Bit_score: 2720
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Azospirillum lipoferum → Azospirillum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4194
ATGGCCAAATCCTTTACGGGTCGTAAACGTGTTCGGAAGAGCTTCGGGCGCATCCCGGAAGTCACCCAGATGCCCAACCTCATCGAGGTGCAGCGCAGCTCCTACGACCACTTCCTGCAAATGGACATCGCCCCGGAAAAGCGGGCGAACCTGGGCCTGCAGGAAGTGTTCAAGTCGGTCTTCCCGATCAAGGACTTCTCCGACCGCGCGGTGCTGGATTTCGTCAAGTACGAGCTTGAGCAGCCGAAGTACGACGTCGAGGAGTGCCAGCAGCGTGGCATGACCTTCGCCGCCCCGCTGAAGGTGACCCTGCGCCTGTCCGTGTTCGACGTCGAGGAGGATACCGGCCTCCGTTCGATCCGCGACATCAAGGAGCAGGACGTCTACATGGGCGACATGCCCCTGATGACGGCCAACGGCACCTTCGTCATCAACGGCACCGAACGCGTCATCGTCTCGCAGATGCACCGCTCGCCGGGCGTCTTCTTCGACCATGACAAGGGCAAGACCCACGCGTCGGGCAAGTATCTGTTCGCCGCCCGCGTCATTCCCTATCGCGGTTCCTGGCTCGACTTCGAGTTCGACGCCAAGGATCTCGTCTACGTCCGCATCGACCGCCGCCGCAAGCTGCCGGCCACCACGCTGCTGTTCGCTCTGGACGGCGCGGAGACCGAGGCGCTGCGCGCCGAGCGCAAGGCCAACCGCAAGGACCTGCTGCCCTACGAGGCGCAGGGCATGGCCAAGGAAGAGATCCTCAACTACTTCTACGACACCATCACCTACACGCGCTCGGCCGGCGGTTGGAAGACCCCGTTCAGCGCCGAGCGGATGAAGGGCGTCAAGCTGATTTCGGACCTCGTGGACGCCTCCACCGGCGCCATCGTCGCCGAGGCCGGCACCAAGATGACCCCGCGCGTCATCAAGAAGCTGGTCGAAGCCGGCCTGACCGAGCAGCAGGTCTCCACCGAGGAGCTGACCGGCCGCTACCTCGCCGTCGACATCATCAACGAGCGCACGGGCGAAGTCCTGTTCGAAGCCGGTGACGAGCTGTCGGCGAGCGACCTCGACAAGCTGGAGAAGACCGGCGTCGACGAGCTGCCGGTGCTGGCGATCGACCATCTGAACGTCGGCGCCTACATCCGCAACACCATGAATGCGGACCGCAATGCCAGCCGCGAAGATGCCCTGATCGACATCTACCGCGTCATGCGTCCGGGCGAGCCGCCGACCCTGGAATCGGCCGAGGCGCTGTTCTCGGGCCTGTTCTTCGACAGCGAGCGCTACGACCTGTCGGCCGTGGGCCGCGTGAAGATGAACGCGCGCCTGAACTTCCAGACCGACGACCAGATGCGCGTTCTCCGCAAGGAGGACATCCTGGAGATCCTGAAGGTTCTGGTGAACCTGAAGGACGGCCGCGGCGAAATCGACGACATCGACCATCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAGCTGATGGAGAACCAGTACCGCGTCGGCCTGCTGCGCATGGAACGTGCGATCCGCGAGCGTATGAGCTCGGTCGAGATCGACACGGTGATGCCGCACGACCTGATCAACGCGAAGCCGGCGGCCGCCGCCGTGCGCGAGTTCTTCGGCTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGATCACGCACAAGCGTCGTCTCTCGGCTCTCGGCCCGGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTGCACCCGACGCACTATGGCCGCATCTGCCCGATTGAGACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCGACCTACGCCCGCGTGAACCAGTACGGCTTCATCGAGAGCCCCTACCGCAAGGTCATCGACGGCAAGGTCACCAACGAGGTGGTCTATCTGTCGGCGATGGAGGAGGGCCGCTACGTCGTCGCCCAGGCGAACGCCGAGTTGAACCCCGACAACAGCTTCGCCGCCGATCTGGTGTCCTGCCGCCAGGGCGGTGAATACCTGATGTTCCGGCCCGAGGCGATCGACCTGATCGACGTGTCGCCGAAGCAGCTGGTGTCCGTCGCCGCGGCGCTGATCCCGTTCCTGGAGAACGACGACGCCAACCGCGCGCTGATGGGCTCGAACATGCAGCGTCAGGCGGTGCCGTTGGTGAAGGCCGACGCGCCGCTGGTCGGCACCGGCATGGAGGCGACCGTCGCCCGCGACAGCGGCGTGACCATCGTCGCCAAGCGTTCCGGCATCGTCGACCAGGTTGACGCCACCCGCATCGTCGTCCGCGCCACCGACAGCTCGGACAGCACGGCGCCGGGCGTCGACATCTACAACCTGCTGAAGTTCCAGCGTTCCAACCAGAACACCTGCATCACCCAGCGTCCGCTGGTGAAGGTGGGCGACCGGGTGAACGCTGGCGACATCGTGGCCGACGGTCCGTCGACCGACCTGGGTGAGCTGGCGCTCGGCCGGAACGTGCTCGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTCATCAACGAGCGCATCGTCAAGGACGACGTCTTCACCTCGATCCACATCGAGGAGTTCGAGGTCATGGCCCGCGACACCAAGCTGGGCCAGGAGGAAATCACCCGCGACATTCCGAACGTGGGTGAGGAAGCTCTGAAGAACCTCGACGAGGCCGGCATCGTCTACATCGGCGCCGAAGTCCGTCCGGGCGATATTCTGGTCGGCAAGGTGACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAGAAGCTGCTGCGCGCCATCTTCGGCGAGAAGGCTTCGGATGTCCGCGACACCTCGCTGCGCCTGCCGCCGGGCGTCGTCGGCACCATCGTCGAGGTCCGTGTGTTCAGCCGCCGCGGTGTCGACAAGGACGAGCGCGCACTCGCCATCGAACGCGCCGAGATCGAGAAGCTGGCCAAGGACCGCGACGACGAGCGCGGCATTCTGGAGCGCAGCTTCTACACCCGCCTGAAGGAAGTGCTGCTCGGCCAGACCGCGCAGTCCGGCCCGAAGGGCATGAAGGGTGGCACGGTCCTGACCGAGGAGGTTCTGGCCGGCCTGTCGAAGGGCCTGTGGCGCCAGATCGCCATCGCCGACGAGCAGGTGATGGAGACCGTCGAGAACCTGGCCAAGGTGTTCGACGACTCGATCAAGGCCCTGCAGGACCGCTTCGAGAACAAGGTCGACAAGCTGCAGCGCGGTGACGAGCTGCCGCCGGGCGTCATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGTGTCGTCTCGCGCATCATCCCGCAGGAGGACATGCCGTACCTTGAGGACGGCACCCCGGTCGATCTGGTGCTGAACCCGCTGGGCGTGCCGTCGCGCATGAACGTCGGTCAGATCCTGGAAACCCACCTCGGTTGGGCGGCCTCGGGTCTCGGCAAGCAGATCGGCCGCGCGGTCGACCAGTACCGTCTGGCGATCCGCCAGAAGGCGGAAGGCGCTCCCCAGCTGGAGGCCCTGCGCAGCACGCTGAAGTCGGCGTACGGCGAGGTGACCTACAACGAGGACATCGCCGACATGACCGACGGCGAGCTGCTGGAGCTGGGCGGCAACCTGCGCAAGGGCGTGCCCTTCGCGACGCCGGTCTTCGACGGCGCCCGCGAGGAGGACATCTGCGTCCATCTGGAGCGTGCCGGTTTCGACCGGTCGGGCCAGTCGACGCTGGTGGACGGCCGGACCGGCGAAACCTTCGACCGCAAGGTCACCGTCGGCTACATCTACATGCTGAAGCTGCACCATTTGGTGGACGACAAGATCCACGCCCGGTCGATCGGCCCCTACTCGCTGGTCACGCAGCAGCCGCTGGGCGGTAAGGCCCAGTTCGGCGGTCAGCGCTTCGGTGAGATGGAGGTCTGGGCGCTGGAAGCCTACGGCGCCGCCTACACGCTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTGTCCGGCCGCACCAAGGTCTACGAGGCCATCGTCCGCGGCGACGACAACTTCGAGGCCGGCATTCCGGAGTCGTTCAACGTGCTGGTCAAGGAGCTGCGCTCGCTCGGCCTTAACGTCGAACTGAACCAGCGGTCCTACTGA
PROTEIN sequence
Length: 1398
MAKSFTGRKRVRKSFGRIPEVTQMPNLIEVQRSSYDHFLQMDIAPEKRANLGLQEVFKSVFPIKDFSDRAVLDFVKYELEQPKYDVEECQQRGMTFAAPLKVTLRLSVFDVEEDTGLRSIRDIKEQDVYMGDMPLMTANGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHASGKYLFAARVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLFALDGAETEALRAERKANRKDLLPYEAQGMAKEEILNYFYDTITYTRSAGGWKTPFSAERMKGVKLISDLVDASTGAIVAEAGTKMTPRVIKKLVEAGLTEQQVSTEELTGRYLAVDIINERTGEVLFEAGDELSASDLDKLEKTGVDELPVLAIDHLNVGAYIRNTMNADRNASREDALIDIYRVMRPGEPPTLESAEALFSGLFFDSERYDLSAVGRVKMNARLNFQTDDQMRVLRKEDILEILKVLVNLKDGRGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNQYGFIESPYRKVIDGKVTNEVVYLSAMEEGRYVVAQANAELNPDNSFAADLVSCRQGGEYLMFRPEAIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEATVARDSGVTIVAKRSGIVDQVDATRIVVRATDSSDSTAPGVDIYNLLKFQRSNQNTCITQRPLVKVGDRVNAGDIVADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILINERIVKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEAGIVYIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVVGTIVEVRVFSRRGVDKDERALAIERAEIEKLAKDRDDERGILERSFYTRLKEVLLGQTAQSGPKGMKGGTVLTEEVLAGLSKGLWRQIAIADEQVMETVENLAKVFDDSIKALQDRFENKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRIIPQEDMPYLEDGTPVDLVLNPLGVPSRMNVGQILETHLGWAASGLGKQIGRAVDQYRLAIRQKAEGAPQLEALRSTLKSAYGEVTYNEDIADMTDGELLELGGNLRKGVPFATPVFDGAREEDICVHLERAGFDRSGQSTLVDGRTGETFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKELRSLGLNVELNQRSY*