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2019_SCN_bioreactor_t3_planktonic_scaffold_5545_5

Organism: 2019_SCN_bioreactor_t3_planktonic_Azospirillum_lipoferum_68_106

near complete RP 49 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(3477..7649)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 1390.0
  • Bit_score: 2708
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z362_AZOL4 similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 1390.0
  • Bit_score: 2708
  • Evalue 0.0
rpoC; RNA polymerase, beta prime subunit similarity KEGG
DB: KEGG
  • Identity: 99.5
  • Coverage: 1390.0
  • Bit_score: 2708
  • Evalue 0.0

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Taxonomy

Azospirillum lipoferum → Azospirillum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4173
ATGAATGAGTTGATGAACATTTTCGGCCAGGTCCAGGGGCCGCAGAGCTTCGATCAGATCCGCATCCAGATCGCGAGCCCCGAGCGGATCCGGTCCTGGTCCTACGGCGAGATCAAGAAGCCGGAAACCATCAACTACCGCACCTTCAAGCCGGAGCGCGACGGCCTGTTCTGCGCCCGCATCTTCGGCCCGATCAAGGACTACGAGTGCTTGTGCGGCAAGTACAAGCGCATGAAGTATCGCGGCATCATCTGCGAGAAGTGCGGCGTCGAGGTTACGCTGTCGAAGGTCCGGCGCGAGCGCATGGGCCATATCGAACTGGCGTCTCCCGTCGCGCACATCTGGTTCCTGAAGTCGCTGCCGAGCCGCATCGGTCTGCTGCTCGACATGACGCTCAAGGATCTGGAGCGCATCCTCTATTTCGAAAACTACGTCGTCATCGAGCCGGGCCTCACCCCGCTGAAGCTGCATTCGCTGCTGAACGAGGAAGAGTACCTGAACGCCCAGGACGAGTACGGCGAGGACGCCTTCACCGCGTCGATCGGTGCCGAAGCGCTGCGCATCATGCTGTCCGCGCTCGACCTCGACGAGGAGAAGAAGCGCTGCCGTGAGGATCTGCGCGACACCAACTCCGAAGCCAAGCGCAAGAAGCTGGTCAAGCGCCTGAAGCTGATCGACGCCTTCCTGGCCTCGCAGTCGCGTCCGGAGTGGATGATCCTGGAAGTCATTCCGGTGATCCCGCCCGAACTGCGTCCGCTGGTCCCGCTGGACGGCGGCCGCTTCGCCACGTCCGACCTGAACGACCTGTACCGCCGCGTCATCAACCGCAACAACCGTCTGAAGCGGCTGATCGAGCTGAAGGCGCCGGACATCATCGTCCGCAACGAGAAGCGCATGCTGCAGGAGGCCGTCGACGCTCTGTTCGACAACGGCCGCCGTGGTCGCGTCATCACCGGCGCCAACAAGCGTCCGCTGAAGTCGCTGTCCGACATGCTGAAGGGCAAGCAGGGCCGCTTCCGTCAGAACCTGCTCGGCAAGCGCGTCGACTACTCGGGCCGTTCGGTCATCGTCGTCGGTCCGGAGCTGAAGCTGCACCAGTGCGGCCTGCCGAAGAAGATGGCGCTGGAGCTGTTCAAGCCCTTCATCTACGCCAAGCTGGAGCTGTACGGCCTCGCCTCCACCATCAAAGCCGCTAAGCGGATGGTGGAAAAGGAACGTCCCGAGGTGTGGGACATCCTGGAAGAGGTCATCCGCGAGCATCCGGTGATGCTGAACCGGGCGCCGACGCTGCACCGTCTCGGCATCCAGGCGTTCGAGCCGACGCTGATCGAAGGCAAGGCGATCCAGCTGCACCCGCTGGTCTGCACCGCCTTCAACGCCGACTTCGACGGCGACCAGATGGCCGTGCACGTGCCCCTGAGCCTCGAGGCCCAGCTGGAAGCGCGCGTCCTGATGATGTCGACCAACAACATCCTGTCGCCCGCCAACGGCAAGCCGATCATCGTCCCGTCGCAGGACATCGTGCTCGGCATCTACTACATCTCCATGGACCGCCCGAGCGAGAAGGGCGAGGGCATGGTGTTCGCCAATGTCTCGGAAATCGAGCAGGCGCTGAACGCCAAGGTCCTGTCGATCCATGCGAAGATCAAGGCGCGCTACGTCGGCGTTGACGACGAGGGCAACGAGCTGATCAGCATCGTCGAGACGACGCCGGGCCGCATGCTCCTGTCGGAGTTGCTGCCGCGTCACCCGAAGGTGCCCTTCTCGCTGATCAACCGCGTTCTGACCAAGAAGGACGTCGGCAACGTCATCGACGCCGTCTACCGCCATTGCGGTCAGAAGGAGACGGTGATCTTCGCCGATCGCCTGATGAAGCTCGGCTTCGGTCACGCCTGCCGCGCCGGCATTTCCTTCGGCAAGGACGACATGGTCATCCCCGCCGCCAAGGAGAAGCTGGTCAACGAGTCGAAGGAGCGGGTGAAGGAGTTCGAGCAGCAGTATCTCGACGGCCTGATCACGCAGGGCGAGAAGTACAACAAGGTCGTCGACGTCTGGTCGGAATGCACCGAAAAGGTCGCCTCCGAGATGATGAAGGCGATCTCGACCACCGAAGCCGGCAAGCCGGTCAACTCGGTGTACATGATGGCTCACTCCGGTGCGCGTGGTTCCGCCGCGCAGATCCGTCAGCTGGCCGGCATGCGCGGCCTGATGGCCAAGCCGTCGGGCGAGATCATCGAGACGCCGATCATCTCGAACTTCAAGGAAGGCCTGACCGTGCTGGAGTACTTCAACTCCACCCACGGCGCCCGCAAGGGTCTGGCCGACACCGCCTTGAAGACGGCGAACTCCGGTTACCTGACCCGTCGTCTGGTCGACGTGGCGCAGGACGCCATCATCGTCGAGCATGATTGCGGCACCGAGCGCGGCATCACCGTGAAGGCGGTGATCGACGGCGGTGAAGTCATCAGCCCGCTGGGCGATCGCATCCTCGGCCGCACCGTGGTCGGCGCCGTGATCGACCCGCTGAACGGCGAGCTGATCGTCGAGGACGGCGGCCTGATCGACGAGCCGACGGTCGACCGCATCGAGCGGTCGGGCATCGACTCGGTCAAGATTCGCTCGGTCCTGACCTGCGAGACCCGCGACGGCGTCTGCGCCAAGTGCTACGGCCGTGATCTGGCCCGCGGCACGCTGGTCAACACCGGCGAGGCGGTCGGCGTCATCGCGGCTCAGTCGATCGGCGAGCCGGGCACCCAGCTGACGATGCGTACCTTCCACATCGGTGGTGCGGCGCAGCGCGGTGCGGAGCAGAGCCAGATCGAGGCGGCGTTCGACGCGACGGTGCGGATCAACAACCGCAACGTCGTCATGAACTCCTCGGGCATCCCGGTCGTCATGGGCCGCAGCACCGAAGTGATCCTGCTCGACGAGCAGGGCCGCGAGCGGGCGCGTCACCGCGTGCCGTATGGTGCCAAGCTGCTGGCGGACGAGGGTGTGAAGGTCGAGCGCGGCGCCAAGCTGGCCGAGTGGGACCCCTACACCCTGCCGATCATCACCGAGCGTGCCGGTACCGCCCGCTACATCGACCTCGTGGAAGGCATCTCCATGCGCGAGGTGATGGACGAGGCGACGGGCATCAGCTCCAAGGTGGTGGTCGACTGGCGCCAGCAGCCGCGCGGTGCCGATCTGAAGCCGCGCATCGCGCTGGTGGACGAGCGGGGCGAGCTGATCACCCTGCCGAACGGACTGGAAGCCCGCTACTTCATGTCGGTGGACGCCATCCTGTCGGTGGAGAACGGTGCAGAGGTCCGGGCCGGCGACGTGCTGGCGCGTATCCCGCGCGAGTCGTCCAAGACCCGTGACATCACCGGTGGTCTGCCGCGCGTGGCCGAGCTGTTCGAGGCGCGTCGTCCGAAGGACTTCGCCATCATCTCGGAGATGAGCGGCCGCGTCGAATTCGGTAAGGACTACAAGACCAAGCGCCGCATCGTCGTCCGCAACGACGAGAGCGGTGACGAGAAGGAGTATCTGATCCCGAAGGGCAAGCACATCTCCGTGCAGGAGGGTGACTATGTCGAACGCGGCGATCTGCTGATGGACGGCAACCCGGTGCCGCACGACATCCTGGCGGTGATGGGTGTGGAGGCTTTGGCCGACTACCTGATCAACGAAATCCAGGACGTCTATCGACTGCAGGGCGTGAAGATCAACGACAAGCACATCGAGGTGATCGTTCGCCAGATGCTGCAGAAGGTCGAGATCACCGACGCCGGCGAGACCACCTTCCTGGTGGGCGAGCAGGTCGACCGTCAGGAGTTCGACGAAGAGAACGAGAAGACGGTTGCCGAGGGGCTGCAGCCGGCCCACGGTCACCCGGTTCTCCAGGGCATCACCAAGGCCAGCCTGCAGACGCGCTCCTTCATCTCGGCCGCGTCGTTCCAGGAAACCACCCGCGTCCTCACGGAAGCGGCCGTCGGCGGCAAGGTCGACAACCTGGAGGGCCTGAAGGAGAACGTCATCGTCGGCCGTCTGATCCCGGCCGGCACTGGCTCCGTGGTGAACCGCCTGAAGCTGATCGCCGCCGAGCGTGACCGCGAAGCGGCCCTGGAGGCCGGCGCTCCGGAGGAAACTCCGGCGCTGCCGACCCCGGGCGAGGAAAGCTCCGCGGCCTGA
PROTEIN sequence
Length: 1391
MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHSLLNEEEYLNAQDEYGEDAFTASIGAEALRIMLSALDLDEEKKRCREDLRDTNSEAKRKKLVKRLKLIDAFLASQSRPEWMILEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRMLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYISMDRPSEKGEGMVFANVSEIEQALNAKVLSIHAKIKARYVGVDDEGNELISIVETTPGRMLLSELLPRHPKVPFSLINRVLTKKDVGNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPAAKEKLVNESKERVKEFEQQYLDGLITQGEKYNKVVDVWSECTEKVASEMMKAISTTEAGKPVNSVYMMAHSGARGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIVEHDCGTERGITVKAVIDGGEVISPLGDRILGRTVVGAVIDPLNGELIVEDGGLIDEPTVDRIERSGIDSVKIRSVLTCETRDGVCAKCYGRDLARGTLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQIEAAFDATVRINNRNVVMNSSGIPVVMGRSTEVILLDEQGRERARHRVPYGAKLLADEGVKVERGAKLAEWDPYTLPIITERAGTARYIDLVEGISMREVMDEATGISSKVVVDWRQQPRGADLKPRIALVDERGELITLPNGLEARYFMSVDAILSVENGAEVRAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKDFAIISEMSGRVEFGKDYKTKRRIVVRNDESGDEKEYLIPKGKHISVQEGDYVERGDLLMDGNPVPHDILAVMGVEALADYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEITDAGETTFLVGEQVDRQEFDEENEKTVAEGLQPAHGHPVLQGITKASLQTRSFISAASFQETTRVLTEAAVGGKVDNLEGLKENVIVGRLIPAGTGSVVNRLKLIAAERDREAALEAGAPEETPALPTPGEESSAA*