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2019_SCN_bioreactor_t3_planktonic_scaffold_38078

Search features with annotation key words

Displaying items 1-30 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..125
DNA (123bp) protein (41aa)
Insertion element IS1 protein insB n=2 Tax=Escherichia coli RepID=L4FL10_ECOLX
IS1 ORF2
Putative transposase {ECO:0000313|EMBL:KDZ13525.1}; Flags: Fragment;; TaxID=1444185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-474-04_S3_C3.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_2
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

186..1139
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI00037FC0E7
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EEB78601.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
restriction modification system DNA specificity domain protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_3
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1149..3419
DNA (2271bp) protein (757aa)
Uncharacterized protein n=1 Tax=Xenorhabdus bovienii (strain SS-2004) RepID=D3V7G9_XENBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBJ81781.1}; TaxID=406818 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii (strain SS-2004).;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_4
Marinobacter sp. C1S70, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3416..5062
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. C1S70 RepID=U7NLE9_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERS84168.1}; TaxID=1396859 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. C1S70.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_5
Marinobacter sp. C1S70, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5059..5985
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. C1S70 RepID=U7NP05_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERS84169.1}; TaxID=1396859 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. C1S70.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_6
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6128..6844)
DNA (717bp) protein (239aa)
Integrase core domain protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BIU6_9ENTR
Integrase core domain protein {ECO:0000313|EMBL:EFE06340.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
transposase
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_7
Yersinia aldovae, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6895..7161)
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=10 Tax=Enterobacteriaceae RepID=A4WGN1_ENT38
transposase
Transposase family protein {ECO:0000313|EMBL:AJJ61816.1}; TaxID=1453495 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia aldovae 670-83.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_8
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7214..7477
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AJ96_CITK8
Uncharacterized protein {ECO:0000313|EMBL:KHT43791.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_9
unknown

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comp(7724..7849)
DNA (126bp) protein (42aa)

This feature has no annotations

2019_SCN_bioreactor_t3_planktonic_scaffold_38078_10
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7862..8020)
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:EWF64521.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_11
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7998..8477)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca E718 RepID=I6W963_KLEOX
Uncharacterized protein {ECO:0000313|EMBL:EWF64522.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_12
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8579..10153)
DNA (1575bp) protein (525aa)
Uncharacterized protein ImpA n=1 Tax=Klebsiella oxytoca E718 RepID=I6X6W4_KLEOX
Type VI secretion-associated protein {ECO:0000313|EMBL:EWF64523.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_13
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10271..10399)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8W9R5_KLEOK
Uncharacterized protein {ECO:0000313|EMBL:EWF64524.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
hypothetical protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_14
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11203..12912)
DNA (1710bp) protein (570aa)
Putative uncharacterized protein n=1 Tax=Klebsiella oxytoca 10-5243 RepID=H3LS86_KLEOX
TolA protein
TolA protein {ECO:0000313|EMBL:AID91759.1}; TaxID=1333852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca KONIH1.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_15
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12909..13313)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca E718 RepID=I6WT95_KLEOX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWF64526.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_16
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13609..14520)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=4 Tax=Klebsiella oxytoca RepID=G8WAP2_KLEOK
transcriptional regulator GbuR
Transcriptional regulator GbuR {ECO:0000313|EMBL:AFN33765.1}; TaxID=1191061 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca E718.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_17
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14637..15587
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAP3_KLEOK
hypothetical protein
Agmatinase {ECO:0000313|EMBL:EWF64528.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_18
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15598..16446
DNA (849bp) protein (283aa)
AP endonuclease, family 2 n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAP4_KLEOK
Xylose isomerase {ECO:0000313|EMBL:EWF64529.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
AP endonuclease, family 2
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_19
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16459..17535
DNA (1077bp) protein (359aa)
Oxidoreductase, 2OG-Fe(II) oxygenase family protein n=2 Tax=Klebsiella RepID=J6IJV3_9ENTR
2OG-Fe(II) oxygenase
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:AID91764.1}; TaxID=1333852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca KONIH1.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_20
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17545..18348
DNA (804bp) protein (268aa)
Amino acid ABC transport system periplasmic amino acid-binding component n=2 Tax=Klebsiella RepID=G8WAP6_KLEOK
amino acid ABC transport system periplasmic amino acid-binding component
Extracellular solute-binding family protein 3 {ECO:0000313|EMBL:EWF64531.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_21
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18373..19893
DNA (1521bp) protein (507aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=2 Tax=Klebsiella RepID=H3LBU1_KLEOX
Uncharacterized protein {ECO:0000313|EMBL:EWF64532.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
glutamine ABC transporter ATP-binding protein
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_22
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19894..20622
DNA (729bp) protein (243aa)
Class II aldolase/adducin N-terminal domain protein n=2 Tax=Klebsiella RepID=J6IJS8_9ENTR
aldolase
Aldolase {ECO:0000313|EMBL:AID91767.1}; TaxID=1333852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca KONIH1.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_23
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20628..21560
DNA (933bp) protein (311aa)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Klebsiella oxytoca E718 RepID=I6X6X5_KLEOX
Gyoxylate/hydroxypyruvate reductase A {ECO:0000313|EMBL:EWF64534.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2-hydroxyacid dehydrogenase
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_24
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21557..22615)
DNA (1059bp) protein (353aa)
Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH n=1 Tax=Klebsiella oxytoca E718 RepID=I6VYJ2_KLEOX
Uncharacterized protein {ECO:0000313|EMBL:EWF64535.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_25
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22612..23169)
DNA (558bp) protein (186aa)
Thiol:disulfide interchange protein DsbE n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAQ1_KLEOK
thiol:disulfide interchange protein DsbE
Thiol:disulfide interchange protein DsbE {ECO:0000313|EMBL:EWF64536.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_26
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23166..25103)
DNA (1938bp) protein (646aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAQ2_KLEOK
Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EWF64537.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
heme lyase subunit CcmF
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_27
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25100..25579)
DNA (480bp) protein (160aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Klebsiella oxytoca E718 RepID=I6VNP0_KLEOX
cytochrome C biogenesis protein CcmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_28
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25576..25779)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAQ4_KLEOK
Heme exporter protein CcmD {ECO:0000313|EMBL:EWF64539.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
heme exporter protein CcmD
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_29
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25776..26513)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAQ5_KLEOK
Heme exporter protein C {ECO:0000313|EMBL:EWF64540.1}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
heme ABC transporter permease
2019_SCN_bioreactor_t3_planktonic_scaffold_38078_30
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26611..27267)
DNA (657bp) protein (219aa)
Heme exporter protein B n=1 Tax=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) RepID=G8WAQ6_KLEOK
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1328430 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca MGH 41.;"
heme ABC transporter permease
Displaying items 1-30 of 159 in total

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