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2019_SCN_bioreactor_t3_planktonic_scaffold_22830_4

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: 4353..4922

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.9
  • Coverage: 181.0
  • Bit_score: 118
  • Evalue 6.50e-24
2''''-5'''' RNA ligase n=1 Tax=Schlesneria paludicola RepID=UPI00029A98E2 similarity UNIREF
DB: UNIREF100
  • Identity: 65.0
  • Coverage: 180.0
  • Bit_score: 230
  • Evalue 1.10e-57
2',5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 39.0
  • Coverage: 177.0
  • Bit_score: 116
  • Evalue 6.50e-24

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Taxonomy

Oceanibaculum indicum → Oceanibaculum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
ATGGCAGCATCCATGAAAAAACTGTTTGTGGCAGTGAGCTTGCCTGACGGCGTCAAGAACGAGTTAGCGTCGATTCAGCCACGCCCATCGCAAGGTGTGAGACCCACCAACGCTCAACAGCTTCACATCACGCTGCATTTCATCGGGCAGGCCGCCAGCGACCGAATTGAACAAGCGCTGAACGCCGTCGCGTGCCCACCATTTTCGCTTTCCATCGCGGGCGTTGGTCACTTTCAATCTTCCGATGGCGGTGTGATCTTGTTCGCAAAGCTCCATTTTTCTCAGGAGCTGCTGCATCTACACACACGAACCGGAGAGGCACTCGCAACCACGGGATTTCAAGTGGAAACGCGACCCTACGCGCCCCACATCACACTCGCCCGCTGCCATCGTGTCCGAACGCCAGGACTGCCGCGAAGTTTCCTCGACCAGCATCAGGACTTGTTACATCCCGACTTTCCGGTCACAGAGTTCGTTCTGTACTCCAGCGAGAGCTCCGCTGCCGGACCGATCTACAGATCCATTCGCGCATTTCCGTTGCATGACCCGAGTCACCAGCAGAATGACTAG
PROTEIN sequence
Length: 190
MAASMKKLFVAVSLPDGVKNELASIQPRPSQGVRPTNAQQLHITLHFIGQAASDRIEQALNAVACPPFSLSIAGVGHFQSSDGGVILFAKLHFSQELLHLHTRTGEALATTGFQVETRPYAPHITLARCHRVRTPGLPRSFLDQHQDLLHPDFPVTEFVLYSSESSAAGPIYRSIRAFPLHDPSHQQND*