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2019_SCN_bioreactor_t3_planktonic_scaffold_61532_9

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: 13103..14680

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 511.0
  • Bit_score: 731
  • Evalue 5.90e-208
helicase n=1 Tax=Schlesneria paludicola RepID=UPI000299F58A similarity UNIREF
DB: UNIREF100
  • Identity: 96.8
  • Coverage: 525.0
  • Bit_score: 1005
  • Evalue 1.20e-290
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 69.9
  • Coverage: 511.0
  • Bit_score: 731
  • Evalue 1.20e-208

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Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1578
ATGGATCGCCTGATCTGCGGTGACGTCGGTTATGGCAAGACGGAAGTGGCCATGCGAGCTGCCTTCAAAGCGGTCGATGCCGGGCGGCAGGTCGCCATGCTCGTTCCGACCACCGTCTTGTGTGAACAACACTTCCGCAGTCTGAGCGAACGCATGGCCGAGTTTCCGGTCAACATCGCGTGCCTCAACCGGTTTAAATCCGCGAAGGAAGTGCGTGAGACTTTGGAAGGGCTCGCCAACGGCACCATCGATATCTGCATCGGCACGCATCGCCTGGTCAGTAAAGATGTCAAATTTAAAGATCTCGGTTTGCTCGTCATCGATGAAGAACAAAGATTCGGTGTCGAAGTGAAAGAGCTGCTCAAACATCTGCGACTCGAAGTCGACGTGCTCACCCTCTCGGCGACACCAATCCCGAGAACACTGCATATGTCGCTCGTCGGTGTCCGCGACATTTCCAACCTCGAAACGCCGCCCCAAGATCGCCAGGCTGTCGAGACCCGCATCTGCCGCTGGGACAAAGAGCTCTTGCGATCAGCAATTGTTCGCGAGCTGAATCGAGATGGTCAGATCTACTTCGTCCACAATCGAATCTACAACATCGAGTCGATTGCCGACGAGCTGCGCGCCCTCGTGCCCGAAGCCACGGTCGACATCGTCCATGGACAGATGTCTGAAGAGCCGATGGAAGCAGCCATGATGAACTTCGTGCACGGTCGCACCAACATACTGGTCGCGACCACAATTATCGAAAGTGGTTTGGATATCCCGAACGCCAACACGATCTTTATCAATCAAGCCAACAACTACGGCCTGTCCGACCTGCATCAGCTCCGTGGACGCGTGGGACGCTACAAGCATCGCGCGTACTGTTACCTGCTGCTCGATGATGGAAAGACGCTCTCACCACAAGCATCCCGACGCTTGAAGGCCATCGAAGAATTCAGCGAACTGGGCGCTGGTTTCAAGATCGCCATGCGCGACCTGGAAATCCGTGGGGCAGGGAACATCCTCGGCACCGAACAATCGGGACACATTGCGTCCGTCGGATACGAACTCTATTGCCATCTGCTTGAGAACGCAGTCCGTGCTGCCAAGCGACAACCCTTGCGCGAGCACCGGCACGTCGAAGTCAATCTCCCTGTCACGGCGTACATTCCGTCCGAATATATTTCCGAAGGCCGGCCCAAAATCGAGATCTATCGTAAGTTCTCACTCGTTTCGACCCGAGAACTTCTTGAGGAACTGCGAGCAGAACTGCGTGACCGGTTTGGACCGCTACCTGAGCCCGTCGAAAAGATGATTCAGATTCGCGAACTGCAGATCTTGGCAATTCGCTGGCAGATCGACGATATCCATCTCGAACCCAACTATGCTGTGTTCGGATATCGAAATCCGAAAAAGATCAACAAGCTTGCGCGCCTCAGCCACGTCCCAGTCCGGGTCGTCGACGACCGCGAAGCTTGTCTGGTCCTGCCTCCGCGTTTGACGGATCCCGAAGAATTGCTCGCGTTGTTGAAGTCAGTCCTCGAGTCAGAACTGCCAACCTTTGCGGATCAGTCCTACCACAGTGATTGA
PROTEIN sequence
Length: 526
MDRLICGDVGYGKTEVAMRAAFKAVDAGRQVAMLVPTTVLCEQHFRSLSERMAEFPVNIACLNRFKSAKEVRETLEGLANGTIDICIGTHRLVSKDVKFKDLGLLVIDEEQRFGVEVKELLKHLRLEVDVLTLSATPIPRTLHMSLVGVRDISNLETPPQDRQAVETRICRWDKELLRSAIVRELNRDGQIYFVHNRIYNIESIADELRALVPEATVDIVHGQMSEEPMEAAMMNFVHGRTNILVATTIIESGLDIPNANTIFINQANNYGLSDLHQLRGRVGRYKHRAYCYLLLDDGKTLSPQASRRLKAIEEFSELGAGFKIAMRDLEIRGAGNILGTEQSGHIASVGYELYCHLLENAVRAAKRQPLREHRHVEVNLPVTAYIPSEYISEGRPKIEIYRKFSLVSTRELLEELRAELRDRFGPLPEPVEKMIQIRELQILAIRWQIDDIHLEPNYAVFGYRNPKKINKLARLSHVPVRVVDDREACLVLPPRLTDPEELLALLKSVLESELPTFADQSYHSD*