ggKbase home page

2019_SCN_bioreactor_t3_planktonic_scaffold_93785_2

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(593..1435)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola RepID=UPI000299FD0C similarity UNIREF
DB: UNIREF100
  • Identity: 98.2
  • Coverage: 280.0
  • Bit_score: 538
  • Evalue 2.10e-150
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 81.8
  • Coverage: 274.0
  • Bit_score: 446
  • Evalue 3.10e-123
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.8
  • Coverage: 274.0
  • Bit_score: 446
  • Evalue 1.50e-122

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 843
ATGTCCAAAACTACACGAGTTCGCGAATCGTTCTCCGCGGTGCAGACTCCGCTGGAAACCTACCTTCGCGAAATCAACGAAACGGCGCTGCTGACCGCCGACGAAGAAAAAGAACTCTCACGCCAAATTTCCAATGGCGAGACTGCCGCCCGCGATCGCATGGTTCGTGCAAACCTGCGTTTGGTCGTGAATATCGCTCGGGCGTATACAAACAAGGGCCTGCCTCTGCAGGACTTGATCGAGGAAGGCAACCTGGGGTTGTTGCGGGCGGTCGAAGGTTTCGATCCCGACATGAACACCCGCTTCAGTACGTATGCCAGCTACTGGATTAAGCAGTCGATCAAGCGATCATTGATCAATTCGGCCAAGACGATTCGCATTCCCGCCTACATGGTGGAATTGCTGACCAAATGGCGACGAGCGACGGCCAAGCTAAATGACGAACTGGGCCGAGCCCCCACCCAGGACGAAGTGGCCAAAGAGCTGGGGCTTCCCAAGAAGAAGATGAGCATCGTCAAAACGGCCATCCAACTCTATACGCAGACTCCTCAGACCGACGACGAAGAGAGCGGTTGGATGATGAGTGACATGGTCGCTGATGACCGTGCGAAGGGCCCCGAAGACGAACTGCTGGATACCGATAATCTGAAGCATGTCTTCCGGATGCTCGATTCGATGGATCCGCGGGAAGCGACAATCCTGCGTATGCGATTTGGTTTGGATGACGCCGAACCACGGACGCTGAAAGAGATCGGCGAATCGCTGGGGCTGACGCGCGAACGCGTCCGCCAGATCGAAAGCGACGCGTTGAAGCGAATTGCCAAGGAAATCCTCGGCGAGTAG
PROTEIN sequence
Length: 281
MSKTTRVRESFSAVQTPLETYLREINETALLTADEEKELSRQISNGETAARDRMVRANLRLVVNIARAYTNKGLPLQDLIEEGNLGLLRAVEGFDPDMNTRFSTYASYWIKQSIKRSLINSAKTIRIPAYMVELLTKWRRATAKLNDELGRAPTQDEVAKELGLPKKKMSIVKTAIQLYTQTPQTDDEESGWMMSDMVADDRAKGPEDELLDTDNLKHVFRMLDSMDPREATILRMRFGLDDAEPRTLKEIGESLGLTRERVRQIESDALKRIAKEILGE*