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GWF2_RBX1_38_17_gwf2_scaffold_1875

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_1875_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(1..4284)
DNA (4284bp) protein (1428aa)
id=2148966 Tax=GWF2_RBX1_38_17_curated
id=2148966 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWF2_RBX1_38_17_gwf2_scaffold_1875_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(4610..5731)
DNA (1122bp) protein (374aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] T
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD id=3625254 bin=GWF2_OP9-related_38_17 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_1875_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(5736..6383)
DNA (648bp) protein (216aa)
ribulose-5-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=24608948 bin=RAAC11 species=Syntrophobotulus glycolicus genus=Syntrophobotulus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
ribulose-5-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=GWF2_RBX1_38_17_curated
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
GWF2_RBX1_38_17_gwf2_scaffold_1875_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(6380..7273)
DNA (894bp) protein (298aa)
ribosome small subunit-dependent GTPase A; K06949 ribosome biogenesis GTPase [EC:3.6.1.-] Tax=GWF2_RBX1_38_17_curated
Putative ribosome biogenesis GTPase RsgA id=2121667 bin=GWE2_RBX1_39_32 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ribosome small subunit-dependent GTPase A
GWF2_RBX1_38_17_gwf2_scaffold_1875_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(7276..9030)
DNA (1755bp) protein (585aa)
serine/threonine protein kinase with PASTA sensor(s); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=GWF2_RBX1_38_17_curated
Non-specific serine/threonine protein kinase id=3625260 bin=GWF2_OP9-related_38_17 species=Pseudoramibacter alactolyticus genus=Pseudoramibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
serine/threonine protein kinase with PASTA sensor(s)
GWF2_RBX1_38_17_gwf2_scaffold_1875_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(9135..10565)
DNA (1431bp) protein (477aa)
Putative uncharacterized protein id=2121663 bin=GWE2_RBX1_39_32 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein; K09749 hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(10779..11069)
DNA (291bp) protein (97aa)
nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta id=24608944 bin=RAAC11 species=Arenimonas oryziterrae genus=Arenimonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=GWF2_RBX1_38_17_curated
nucleoid DNA-binding protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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11417..12781
DNA (1365bp) protein (455aa)
Two component, sigma54 specific, Fis family transcriptional regulator id=2121659 bin=GWE2_RBX1_39_32 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
two component, sigma54 specific, Fis family transcriptional regulator Tax=GWF2_RBX1_38_17_curated
two component, sigma54 specific, Fis family transcriptional regulator
GWF2_RBX1_38_17_gwf2_scaffold_1875_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(12796..13104)
DNA (309bp) protein (103aa)
id=2121658 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2121658 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(13277..14089)
DNA (813bp) protein (271aa)
Peptidase id=3625352 bin=GWF2_OP9-related_38_17 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
Zn-dependent protease with chaperone function Tax=GWF2_RBX1_38_17_curated
Zn-dependent protease with chaperone function
GWF2_RBX1_38_17_gwf2_scaffold_1875_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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14780..16123
DNA (1344bp) protein (448aa)
TPR domain/SEC-C motif domain protein id=2121654 bin=GWE2_RBX1_39_32 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
TPR domain/SEC-C motif domain protein Tax=GWF2_RBX1_38_17_curated
TPR domain/SEC-C motif domain-containing protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(16112..16321)
DNA (210bp) protein (70aa)
id=24608939 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608939 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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16454..17998
DNA (1545bp) protein (515aa)
id=2121651 bin=GWE2_RBX1_39_32 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2121651 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(17976..19349)
DNA (1374bp) protein (458aa)
Membrane protein related to metalloendopeptidase id=24608937 bin=RAAC11 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
Membrane protein related to metalloendopeptidase Tax=GWF2_RBX1_38_17_curated
metalloendopeptidase
GWF2_RBX1_38_17_gwf2_scaffold_1875_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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19600..20169
DNA (570bp) protein (190aa)
Putative uncharacterized protein id=2148902 bin=GWD2_RBX1-related_39_127 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20171..21706)
DNA (1536bp) protein (512aa)
id=2121646 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2121646 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(21703..23127)
DNA (1425bp) protein (475aa)
id=2121645 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2121645 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(23185..23889)
DNA (705bp) protein (235aa)
id=24608933 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608933 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_1875_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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24264..26483
DNA (2220bp) protein (740aa)
UPI00020A9D29 related cluster id=2121638 bin=GWE2_RBX1_39_32 species=Thermodesulfobium narugense genus=Thermodesulfobium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
penicillin-binding protein Tax=GWF2_RBX1_38_17_curated
penicillin-binding protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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26476..27546
DNA (1071bp) protein (357aa)
Membrane protein DUF318 id=2121634 bin=GWE2_RBX1_39_32 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
permease; K07089 Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

27648..28697
DNA (1050bp) protein (350aa)
MscS Mechanosensitive ion channel id=2121631 bin=GWE2_RBX1_39_32 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
mechanosensitive ion channel MscS Tax=GWF2_RBX1_38_17_curated
mechanosensitive ion channel MscS
GWF2_RBX1_38_17_gwf2_scaffold_1875_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28759..29664)
DNA (906bp) protein (302aa)
Putative uncharacterized protein id=3625384 bin=GWF2_OP9-related_38_17 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_1875_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29739..30698)
DNA (960bp) protein (320aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=GWF2_RBX1_38_17_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH id=3625387 bin=GWF2_OP9-related_38_17 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
Displaying 23 items

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