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RBG_16_DPX2_64_85_RBG_16_scaffold_70476

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..793)
DNA (792bp) protein (264aa)
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13); K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] Tax=RBG_16_Deltaproteobacteria_64_85_curated
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13)
Muramoyltetrapeptide carboxypeptidase id=4354298 bin=GWC2_Proteo_65_14_Ab886 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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914..1120
DNA (207bp) protein (69aa)
Transcriptional regulator AbrB family n=1 Tax=uncultured bacterium RepID=K2AWJ5_9BACT
AbrB family transcriptional regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
AbrB family transcriptional regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1117..1503
DNA (387bp) protein (129aa)
PilT domain-containing protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
PilT domain-containing protein id=3123520 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
PilT domain-containing protein
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1512..3917
DNA (2406bp) protein (802aa)
MutS2 protein; K07456 DNA mismatch repair protein MutS2 Tax=RBG_16_Deltaproteobacteria_64_85_curated
MutS2 protein id=4354302 bin=GWC2_Proteo_65_14_Ab886 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
MutS2 protein
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3898..5082)
DNA (1185bp) protein (395aa)
peptidase M20D, amidohydrolase Tax=RBG_16_Deltaproteobacteria_64_85_curated
peptidase M20D, amidohydrolase id=14623842 bin=bin5_DeltaP species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc-dependent amidohydrolase
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5188..6114
DNA (927bp) protein (309aa)
ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=RBG_16_Deltaproteobacteria_64_85_curated
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-); K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] id=14623841 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
prmA; 50S ribosomal protein L11 methyltransferase
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6122..6859
DNA (738bp) protein (246aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Ribosomal RNA small subunit methyltransferase E id=2274525 bin=GWA2_Deltaproteo_65_63 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
16S ribosomal RNA methyltransferase RsmE
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6870..7340
DNA (471bp) protein (157aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14623839 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RDD domain-containing protein
RBG_16_DPX2_64_85_RBG_16_scaffold_70476_trna_1
unknown

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7386..7458
DNA (73bp)
transferRNA
Displaying 9 items

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