ggKbase home page

RBG_16_DPX2_64_85_RBG_16_scaffold_393

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_393_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..111
DNA (111bp) protein (37aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14623084 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_393_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

240..2438
DNA (2199bp) protein (733aa)
formate dehydrogenase (EC:1.2.1.2); K08352 thiosulfate reductase [EC:1.-.-.-] Tax=RBG_16_Deltaproteobacteria_64_85_curated
formate dehydrogenase (EC:1.2.1.2); K08352 thiosulfate reductase [EC:1.-.-.-] id=14623085 bin=bin5_DeltaP species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
formate dehydrogenase (EC:1.2.1.2)
RBG_16_DPX2_64_85_RBG_16_scaffold_393_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2442..3596
DNA (1155bp) protein (385aa)
Polysulfide reductase NrfD Tax=RBG_16_Deltaproteobacteria_64_85_curated
Polysulfide reductase NrfD id=14623086 bin=bin5_DeltaP species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Polysulfide reductase NrfD
RBG_16_DPX2_64_85_RBG_16_scaffold_393_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3601..4311
DNA (711bp) protein (237aa)
putative molybdopterin oxidoreductase iron-sulfur binding subunit Tax=RBG_16_Deltaproteobacteria_64_85_curated
4Fe-4S ferredoxin id=14623087 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
putative molybdopterin oxidoreductase iron-sulfur binding subunit
RBG_16_DPX2_64_85_RBG_16_scaffold_393_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4723..5820)
DNA (1098bp) protein (366aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14624593 bin=bin5_DeltaP species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5817..6428)
DNA (612bp) protein (204aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14624594 bin=bin5_DeltaP species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_393_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6451..7137)
DNA (687bp) protein (229aa)
putative phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] Tax=RBG_16_Deltaproteobacteria_64_85_curated
HAD family hydrolase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18] id=14624595 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
phosphoglycolate phosphatase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7473..8420
DNA (948bp) protein (316aa)
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
biotin synthase (EC:2.8.1.6)
Biotin synthase id=4585118 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_393_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8424..9611
DNA (1188bp) protein (396aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00639 glycine C-acetyltransferase [EC:2.3.1.29] Tax=RBG_16_Deltaproteobacteria_64_85_curated
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00639 glycine C-acetyltransferase [EC:2.3.1.29] id=14624597 bin=bin5_DeltaP species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
RBG_16_DPX2_64_85_RBG_16_scaffold_393_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9583..10935
DNA (1353bp) protein (451aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] Tax=RBG_16_Deltaproteobacteria_64_85_curated
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] id=14624598 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
RBG_16_DPX2_64_85_RBG_16_scaffold_393_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..11615
DNA (684bp) protein (228aa)
dethiobiotin synthase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3] Tax=RBG_16_Deltaproteobacteria_64_85_curated
ATP-dependent dethiobiotin synthetase BioD id=4558358 bin=GWC2_Syntrophobacterales_56_13 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
dethiobiotin synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12353
DNA (711bp) protein (237aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=5007875 bin=GWA2_Deltaproteo_65_63 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12363..13088)
DNA (726bp) protein (242aa)
Sec-independent periplasmic protein translocase; K03118 sec-independent protein translocase protein TatC Tax=RBG_16_Deltaproteobacteria_64_85_curated
Sec-independent periplasmic protein translocase; K03118 sec-independent protein translocase protein TatC id=14624602 bin=bin5_DeltaP species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Sec-independent periplasmic protein translocase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13116..13727)
DNA (612bp) protein (204aa)
Protein dedA, putative Tax=RBG_16_Deltaproteobacteria_64_85_curated
Protein dedA, putative id=14624604 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Streptophyta tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13744..15123)
DNA (1380bp) protein (460aa)
C69 family peptidase; K03568 TldD protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
tldD; zinc protease TldD modulator of DNA gyrase; K03568 TldD protein id=14624605 bin=bin5_DeltaP species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
tldD; zinc protease TldD, putative modulator of DNA gyrase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15202..16902
DNA (1701bp) protein (567aa)
TPR repeat-containing protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
TPR repeat-containing protein id=14624606 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
TPR repeat-containing protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16880..17560
DNA (681bp) protein (227aa)
id=4585110 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=4585110 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_393_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17557..19215
DNA (1659bp) protein (553aa)
peptide ABC transporter, periplasmic peptide-binding lipoprotein Tax=RBG_16_Deltaproteobacteria_64_85_curated
peptide ABC transporter, periplasmic peptide-binding lipoprotein id=14624608 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
peptide ABC transporter substrate-binding lipoprotein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19223..20197
DNA (975bp) protein (325aa)
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC transporter permease; K02033 peptide/nickel transport system permease protein id=14624609 bin=bin5_DeltaP species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
peptide ABC transporter permease
RBG_16_DPX2_64_85_RBG_16_scaffold_393_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20223..21059
DNA (837bp) protein (279aa)
binding-protein dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Binding-protein-dependent transport systems inner membrane component id=2252445 bin=GWA2_Deltaproteo_65_63 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
peptide ABC transporter membrane protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21514..22557
DNA (1044bp) protein (348aa)
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Oligopeptide/dipeptide ABC transporter, ATPase subunit id=2146836 bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
oligopeptide/dipeptide ABC transporter ATPase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_22
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22554..23525
DNA (972bp) protein (324aa)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.24)
putative ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Oligopeptide/dipeptide ABC transporter, ATP-binding protein id=4399440 bin=GWC2_Deltaproteobacteria_66_88 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_393_23
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23655..24002
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5J7_GEOUR
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_24
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24007..25914)
DNA (1908bp) protein (636aa)
type iv-a pilus assembly atpase pilb; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Deltaproteobacteria_64_85_curated
Type IV pilus assembly protein tapB id=4399443 bin=GWC2_Deltaproteobacteria_66_88 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
type IV-a pilus assembly atpase pilb
RBG_16_DPX2_64_85_RBG_16_scaffold_393_25
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26036..26221
DNA (186bp) protein (62aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=4128950 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_393_26
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26328..27230
DNA (903bp) protein (301aa)
peptidase M23 Tax=RBG_16_Deltaproteobacteria_64_85_curated
Peptidase, M23/M37 family id=4128914 bin=GWC2_Proteo_65_14_Ab886 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
peptidase M23
RBG_16_DPX2_64_85_RBG_16_scaffold_393_27
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27333..29873
DNA (2541bp) protein (847aa)
preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA Tax=RBG_16_Deltaproteobacteria_64_85_curated
Protein translocase subunit SecA id=4128912 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
preprotein translocase subunit SecA
RBG_16_DPX2_64_85_RBG_16_scaffold_393_28
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29877..31070
DNA (1194bp) protein (398aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RBG_16_
Arginine biosynthesis bifunctional protein ArgJ id=1769434 bin=GWB2_Deltaproteobacteria_65_81 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_393_29
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31349..32173
DNA (825bp) protein (275aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Deltaproteobacteria_64_85_curated
30S ribosomal protein S2 id=1769442 bin=GWB2_Deltaproteobacteria_65_81 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
rpsB; 30S ribosomal protein S2
RBG_16_DPX2_64_85_RBG_16_scaffold_393_30
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32180..33106
DNA (927bp) protein (309aa)
tsf; translation elongation factor Ts; K02357 elongation factor Ts Tax=RBG_16_Deltaproteobacteria_64_85_curated
Elongation factor Ts id=4128906 bin=GWC2_Proteo_65_14_Ab886 species=Clostridium colicanis genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
elongation factor Ts
Displaying items 1-30 of 126 in total

View Taxonomy