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RBG_16_DPX2_64_85_RBG_16_scaffold_13332

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..502)
DNA (501bp) protein (167aa)
ABC transporter n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3FD75
ABC transporter Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC transporter
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(519..1313)
DNA (795bp) protein (265aa)
hypothetical protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC transporter permease id=5085258 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1339..2133)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YI55_9BACT
ABC transporter integral membrane protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
membrane protein
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2314..3453
DNA (1140bp) protein (380aa)
capsule biosynthesis protein, capa family Tax=RBG_16_Deltaproteobacteria_64_85_curated
Capsule biosynthesis protein id=4790864 bin=GWC2_Nitrospirae-rel_56_14 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
capsule biosynthesis protein, capa family
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3450..4481)
DNA (1032bp) protein (344aa)
endopeptidase LytE (EC:3.4.-.-) Tax=RBG_16_Deltaproteobacteria_64_85_curated
endopeptidase LytE (EC:3.4.-.-)
Probable endopeptidase LytE id=2283928 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4570..5043)
DNA (474bp) protein (158aa)
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
SsrA-binding protein id=3449633 bin=GWC2_Proteo_65_14_Ab886 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
smpB; SsrA-binding protein
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5045..6370)
DNA (1326bp) protein (442aa)
amidohydrolase Tax=RBG_16_Deltaproteobacteria_64_85_curated
Amidohydrolase id=3449627 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
amidohydrolase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..6806)
DNA (405bp) protein (135aa)
aspartate 1-decarboxylase; K01579 aspartate 1-decarboxylase [EC:4.1.1.11] Tax=RBG_16_Deltaproteobacteria_64_85_curated
aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase id=3449622 bin=GWC2_Proteo_65_14_Ab886 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6803..7660)
DNA (858bp) protein (286aa)
pantoate/beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Pantothenate synthetase id=4709452 bin=GWC2_Deltaproteobacteria_66_88 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
pantoate/beta-alanine ligase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7660..8454)
DNA (795bp) protein (265aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=RBG_16_Deltaproteobacteria_64_85_curated
3-methyl-2-oxobutanoate hydroxymethyltransferase id=3449614 bin=GWC2_Proteo_65_14_Ab886 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8718..9368)
DNA (651bp) protein (217aa)
deoxynucleoside kinase Tax=RBG_16_Deltaproteobacteria_64_85_curated
Deoxynucleoside kinase id=3449606 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
deoxynucleoside kinase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9608..10012
DNA (405bp) protein (135aa)
Putative uncharacterized protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=3256717 bin=GWC2_Proteo_65_14_Ab886 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10029..10910)
DNA (882bp) protein (294aa)
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Ribosomal RNA small subunit methyltransferase A id=4918905 bin=GWA2_Deltaproteo_65_63 species=Saccharomonospora glauca genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
dimethyladenosine transferase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10923..11921)
DNA (999bp) protein (333aa)
o-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RBG_16_Deltaproteobacteria_64_85_curated
o-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=3449597 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12429..13748)
DNA (1320bp) protein (440aa)
PhoH-related ATPase; K07175 PhoH-like ATPase Tax=RBG_16_Deltaproteobacteria_64_85_curated
PhoH-related ATPase id=4210280 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
PhoH-related ATPase
RBG_16_DPX2_64_85_RBG_16_scaffold_13332_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13762..14205)
DNA (444bp) protein (148aa)
TPR domain protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
tol-pal system protein YbgF id=14623905 bin=bin5_DeltaP species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
TPR domain-containing protein
Displaying 16 items

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