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RBG_16_DPX2_64_85_RBG_16_scaffold_829

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Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_829_trna_3
unknown

Not on your lists

comp(56..128)
DNA (73bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_829_trna_2
unknown

Not on your lists

comp(141..211)
DNA (71bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_829_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(264..2636)
DNA (2373bp) protein (791aa)
glnS; glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Glutamine--tRNA ligase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I3E1_CALAS
glnS; glutaminyl-tRNA synthetase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2650..4053)
DNA (1404bp) protein (468aa)
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RBG_16_Deltaproteobacteria_64_85_curated
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=14624415 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
gltX; glutamyl-tRNA synthetase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4095..4898)
DNA (804bp) protein (268aa)
hypothetical protein; K06990 Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein; K06990 id=14624414 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_829_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4993..5535
DNA (543bp) protein (181aa)
zinc finger protein; K07040 uncharacterized protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
zinc finger protein; K07040 uncharacterized protein id=14624413 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc finger protein
RBG_16_DPX2_64_85_RBG_16_scaffold_829_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5539..5715
DNA (177bp) protein (59aa)
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_16_Deltaproteobacteria_64_85_curated
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 id=14624412 bin=bin5_DeltaP species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
50S ribosomal protein L32
RBG_16_DPX2_64_85_RBG_16_scaffold_829_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5738..6760
DNA (1023bp) protein (341aa)
PlsX; putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_16_Deltaproteobacteria_64_85_curated
PlsX; putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] id=14624411 bin=bin5_DeltaP species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
PlsX; putative glycerol-3-phosphate acyltransferase PlsX
RBG_16_DPX2_64_85_RBG_16_scaffold_829_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6766..7773
DNA (1008bp) protein (336aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RBG_16_Deltaproteobacteria_64_85_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] id=14624410 bin=bin5_DeltaP species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
3-oxoacyl-ACP synthase (EC:2.3.1.41)
RBG_16_DPX2_64_85_RBG_16_scaffold_829_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7785..8744
DNA (960bp) protein (320aa)
fabD-2; malonyl-CoA--acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RBG_16_Deltaproteobacteria_64_85_curated
FabD; (acyl-carrier-protein) S-malonyltransferase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=14624409 bin=bin5_DeltaP species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
fabD-2; malonyl-CoA--acyl carrier protein transacylase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8780..9523
DNA (744bp) protein (248aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100) Tax=RBG_16_Deltaproteobacteria_64_85_curated
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase id=4186702 bin=GWA2_Deltaproteo_65_63 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_829_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9554..9787
DNA (234bp) protein (78aa)
acyl carrier protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
acpP; acyl carrier protein; K02078 acyl carrier protein id=14624407 bin=bin5_DeltaP species=Sulfurihydrogenibium yellowstonense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin5_DeltaP organism_group=Deltaproteobacteria
acyl carrier protein
RBG_16_DPX2_64_85_RBG_16_scaffold_829_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9859..11097
DNA (1239bp) protein (413aa)
beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RBG_16_Deltaproteobacteria_64_85_curated
3-oxoacyl-ACP synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] id=14624406 bin=bin5_DeltaP species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
beta-ketoacyl synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11111..11572
DNA (462bp) protein (154aa)
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] id=14624405 bin=bin5_DeltaP species=Coprothermobacter platensis genus=Coprothermobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
RBG_16_DPX2_64_85_RBG_16_scaffold_829_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11592..12854
DNA (1263bp) protein (421aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RBG_16_Deltaproteobacteria_64_85_curated
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] id=14624404 bin=bin5_DeltaP species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=bin5_DeltaP organism_group=Deltaproteobacteria
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
RBG_16_DPX2_64_85_RBG_16_scaffold_829_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12858..13328
DNA (471bp) protein (157aa)
zinc-binding CMP/dCMP deaminase; K01493 dCMP deaminase [EC:3.5.4.12] Tax=RBG_16_Deltaproteobacteria_64_85_curated
zinc-binding CMP/dCMP deaminase; K01493 dCMP deaminase [EC:3.5.4.12] id=14624403 bin=bin5_DeltaP species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc-binding CMP/dCMP deaminase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13325..13801
DNA (477bp) protein (159aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RBG_16_Deltaproteobacteria_64_85_curated
Transcriptional repressor NrdR id=4042434 bin=GWC2_Proteo_65_14_Ab886 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
ATPase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13814..14431
DNA (618bp) protein (206aa)
id=14623896 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14623896 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_829_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14428..15591
DNA (1164bp) protein (388aa)
riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Tax=RBG_16_Deltaproteobac
5-amino-6-(5-phosphoribosylamino)uracil reductase id=4042438 bin=GWC2_Proteo_65_14_Ab886 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
riboflavin biosynthesis protein RibD
RBG_16_DPX2_64_85_RBG_16_scaffold_829_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15693..16328
DNA (636bp) protein (212aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9] Tax=RBG_16_Deltaproteobacteria_64_85_curated
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9] id=14624400 bin=bin5_DeltaP species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
riboflavin synthase subunit alpha
RBG_16_DPX2_64_85_RBG_16_scaffold_829_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16342..17547
DNA (1206bp) protein (402aa)
GTP cyclohydrolase II (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RBG_16_Deltaproteobacteria_64_85_curated
GTP cyclohydrolase II (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] id=14624399 bin=bin5_DeltaP species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
3,4-dihydroxy-2-butanone 4-phosphate synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17560..18021
DNA (462bp) protein (154aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RBG_16_Deltaproteobacteria_64_85_curated
6,7-dimethyl-8-ribityllumazine synthase id=4042447 bin=GWC2_Proteo_65_14_Ab886 species=Bhargavaea cecembensis genus=Bhargavaea taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
ribH; 6,7-dimethyl-8-ribityllumazine synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_829_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18089..18460
DNA (372bp) protein (124aa)
NusB antitermination factor; K03625 N utilization substance protein B Tax=RBG_16_Deltaproteobacteria_64_85_curated
N utilization substance protein B homolog id=1722828 bin=GWB2_Deltaproteobacteria_65_81 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
NusB antitermination factor
RBG_16_DPX2_64_85_RBG_16_scaffold_829_22
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18457..21039
DNA (2583bp) protein (861aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_16_Deltaproteobacteria_64_85_curated
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=14624396 bin=bin5_DeltaP species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
leuS; leucine--tRNA ligase (EC:6.1.1.4)
RBG_16_DPX2_64_85_RBG_16_scaffold_829_23
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21039..21572
DNA (534bp) protein (178aa)
id=4042450 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=4042450 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_829_24
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21569..22495
DNA (927bp) protein (309aa)
id=14624394 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14624394 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_829_25
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22586..22852)
DNA (267bp) protein (89aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RBG_16_Deltaproteobacteria_64_85_curated
30S ribosomal protein S20 id=4175059 bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
rpsT; 30S ribosomal protein S20
RBG_16_DPX2_64_85_RBG_16_scaffold_829_26
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22919..23107
DNA (189bp) protein (63aa)
Tax=RBG_16_Deltaproteobacteria_64_85_curated
RBG_16_DPX2_64_85_RBG_16_scaffold_829_27
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23210..23983)
DNA (774bp) protein (258aa)
hypothetical protein; K02499 tetrapyrrole methylase family protein / MazG family protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Conserved protein id=4042535 bin=GWC2_Proteo_65_14_Ab886 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_829_28
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24023..25933
DNA (1911bp) protein (637aa)
Sll0886 protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Sll0886 protein id=4042537 bin=GWC2_Proteo_65_14_Ab886 species=Synechocystis sp. PCC 6803 genus=Synechocystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Displaying items 1-30 of 91 in total

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