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RBG_16_DPX2_64_85_RBG_16_scaffold_1011

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)
sigma-54 dependent trancsriptional regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
transcriptional regulator id=16916055 bin=RBG_16_Aminicenantes_63_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sigma-54 dependent trancsriptional regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

385..690
DNA (306bp) protein (102aa)
thioesterase superfamily protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Thioesterase superfamily protein id=718984 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
thioesterase superfamily protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(605..991)
DNA (387bp) protein (129aa)
iron-molybdenum cluster-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Dinitrogenase iron-molybdenum cofactor biosynthesis protein id=3271285 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
nitrogenase molybdenum-iron cofactor biosynthesis NifB/NifX-like protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1035..1469)
DNA (435bp) protein (145aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
UPF0251 protein Paes_1249 id=2468586 bin=GWC2_Syntrophus__56_31 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1599..2990
DNA (1392bp) protein (464aa)
transcriptional regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
transcriptional regulator id=16916055 bin=RBG_16_Aminicenantes_63_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sigma-54-dependent sensor transcriptional regulator, PAS domain-containing
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3198..3800
DNA (603bp) protein (201aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=24417830 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
nitrogenase molybdenum-iron cofactor biosynthesis protein NifB/NifX-related protein, iron-sulfur cluster-binding protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3824..4156
DNA (333bp) protein (111aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=16916058 bin=RBG_16_Aminicenantes_63_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4298..5575)
DNA (1278bp) protein (426aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RBG_16_Deltaproteobacteria_64_85_curated
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase id=2633616 bin=GWC2_Proteo_65_14_Ab886 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5563..6702)
DNA (1140bp) protein (380aa)
menaquinone biosynthesis protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Menaquinone biosynthesis protein id=2633613 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
menaquinone biosynthesis protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6690..7781)
DNA (1092bp) protein (364aa)
radical SAM protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Radical SAM domain protein id=2283566 bin=GWB2_Deltaproteobacteria_65_81 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
mqnC-2; dehypoxanthinylfutalosine cyclase
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7750..10215)
DNA (2466bp) protein (822aa)
GAF sensor signal transduction histidine kinase Tax=RBG_16_Deltaproteobacteria_64_85_curated
GAF sensor signal transduction histidine kinase id=14623848 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
GAF sensor signal transduction histidine kinase
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10235..11692)
DNA (1458bp) protein (486aa)
glycogen synthase (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21] Tax=RBG_16_Deltaproteobacteria_64_85_curated
glgA; glycogen synthase; K00703 starch synthase [EC:2.4.1.21] id=14623847 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
glycogen synthase (EC:2.4.1.21)
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11713..12708)
DNA (996bp) protein (332aa)
galactose-1-phosphate uridylyltransferase Tax=RBG_16_Deltaproteobacteria_64_85_curated
Galactose-1-phosphate uridylyltransferase id=4004928 bin=GWC2_Deltaproteobacteria_66_88 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
galactose-1-phosphate uridylyltransferase
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12746..13102)
DNA (357bp) protein (119aa)
dnaK suppressor protein; K06204 DnaK suppressor protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
dnaK suppressor protein; K06204 DnaK suppressor protein id=14623845 bin=bin5_DeltaP species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
dnaK suppressor protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13173..13490)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C2231
TonB family protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
TonB family protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13962..15866)
DNA (1905bp) protein (635aa)
btuB; TonB-dependent outer membrane receptor for cobalamin and Fe transport; K02014 iron complex outermembrane recepter protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative TonB-dependent outer membrane receptor for cobalamin and Fe transport id=2633600 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
btuB; cobalamin uptake ligand-gated TonB-dependent outer membrane channel
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16055..16846)
DNA (792bp) protein (264aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Iron ABC transporter ATP-binding protein id=4073868 bin=GWA2_Deltaproteo_65_63 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
ABC transporter-like protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16843..17850)
DNA (1008bp) protein (336aa)
Transport system permease protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC-type Fe3+-siderophore transport system, permease component id=2633595 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Transport system permease protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17847..18773)
DNA (927bp) protein (309aa)
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC-type transporter, periplasmic subunit id=4004922 bin=GWC2_Deltaproteobacteria_66_88 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
ABC transporter substrate-binding protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19134..20165)
DNA (1032bp) protein (344aa)
TPR domain protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Uncharacterized protein id=2633591 bin=GWC2_Proteo_65_14_Ab886 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
TPR domain protein
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20162..21064)
DNA (903bp) protein (301aa)
gspA; general secretion pathway protein A; K02450 general secretion pathway protein A Tax=RBG_16_Deltaproteobacteria_64_85_curated
Peptidoglycan-binding domain 1 protein id=2633589 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
gspA; general secretion pathway protein A
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_22
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21066..22763)
DNA (1698bp) protein (566aa)
mshL; Type II secretory pathway; K12282 MSHA biogenesis protein MshL Tax=RBG_16_Deltaproteobacteria_64_85_curated
MSHA biogenesis protein MshL id=2633587 bin=GWC2_Proteo_65_14_Ab886 species=Shewanella violacea genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
mshL; Type II secretory pathway
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_23
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22766..23311)
DNA (546bp) protein (182aa)
id=2633586 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=2633586 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_24
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23308..23907)
DNA (600bp) protein (200aa)
id=2633585 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=2633585 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_25
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23891..25459)
DNA (1569bp) protein (523aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=3890809 bin=GWA2_Deltaproteo_65_63 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_26
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25487..26266)
DNA (780bp) protein (260aa)
general secretion pathway protein G; K02456 general secretion pathway protein G Tax=RBG_16_Deltaproteobacteria_64_85_curated
General secretion pathway protein G id=2633580 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
general secretion pathway protein G
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_27
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26271..27482)
DNA (1212bp) protein (404aa)
Tfp pilus biogenesis protein PilC; K02653 type IV pilus assembly protein PilC Tax=RBG_16_Deltaproteobacteria_64_85_curated
Tfp pilus biogenesis protein PilC id=2633579 bin=GWC2_Proteo_65_14_Ab886 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tfp pilus biogenesis protein PilC
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_28
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27495..29192)
DNA (1698bp) protein (566aa)
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Deltaproteobacteria_64_85_curated
General secretory pathway protein E id=3890815 bin=GWA2_Deltaproteo_65_63 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
general secretory pathway protein E
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_29
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29214..29792)
DNA (579bp) protein (193aa)
general secretion protein G Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=2633577 bin=GWC2_Proteo_65_14_Ab886 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
general secretion protein G
RBG_16_DPX2_64_85_RBG_16_scaffold_1011_30
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29956..30945)
DNA (990bp) protein (330aa)
poluprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RBG_16_Deltaproteobacteria_64_85_curated
poluprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=14624102 bin=bin5_DeltaP species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
poluprenyl synthetase
Displaying items 1-30 of 31 in total

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