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RBG_16_NSX_64_22_RBG_16_scaffold_2278

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_2278_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1..741
DNA (741bp) protein (247aa)
fusA1; translation elongation factor G; K02355 elongation factor G Tax=RBG_16_Nitrospirae_64_22_curated
Elongation factor G id=3103481 bin=GWC2_Nitrospirae_57_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
fusA1; translation elongation factor G
RBG_16_NSX_64_22_RBG_16_scaffold_2278_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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879..1211
DNA (333bp) protein (111aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RBG_16_Nitrospirae_64_22_curated
Integration host factor, alpha subunit id=4894942 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
histone family protein DNA-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1227..1652
DNA (426bp) protein (142aa)
MerR family transcriptional regulator n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFE0_9BACT
transcription regulator protein Tax=RBG_16_Nitrospirae_64_22_curated
transcription regulator protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_trna_1
unknown

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1746..1819
DNA (74bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_2278_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1968..2735
DNA (768bp) protein (256aa)
surE; acid phosphatase SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RBG_16_Nitrospirae_64_22_curated
5'-nucleotidase SurE id=4430656 bin=GWA2_Deltaproteo_65_63 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
surE; 5'(3')-nucleotidase/polyphosphatase
RBG_16_NSX_64_22_RBG_16_scaffold_2278_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2732..3394
DNA (663bp) protein (221aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RBG_16_Nitrospirae_64_22_curated
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YG96_THEYD
RBG_16_NSX_64_22_RBG_16_scaffold_2278_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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3557..4744
DNA (1188bp) protein (396aa)
Quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RBG_16_Nitrospirae_64_22_curated
Nicotinate phosphoribosyltransferase id=3219565 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
nicotinate phosphoribosyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2278_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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4873..5988
DNA (1116bp) protein (372aa)
outer membrane receptor for ferrienterochelin and colicins Tax=RBG_16_Nitrospirae_64_22_curated
TonB-dependent receptor id=3018610 bin=GWF2_Syntrophobacterales_56_9 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
outer membrane receptor for ferrienterochelin and colicins
RBG_16_NSX_64_22_RBG_16_scaffold_2278_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

5945..6082
DNA (138bp) protein (46aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2278_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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6105..7079
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SWJ9_META2
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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7089..9698
DNA (2610bp) protein (870aa)
putative hybrid histidine kinase (EC:2.7.13.3) Tax=RBG_16_Nitrospirae_64_22_curated
putative hybrid histidine kinase (EC:2.7.13.3)
Putative Hybrid histidine kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBG3_9BACT
RBG_16_NSX_64_22_RBG_16_scaffold_2278_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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9695..11623
DNA (1929bp) protein (643aa)
putative PAS/PAC sensor protein Tax=RBG_16_Nitrospirae_64_22_curated
Multi-sensor hybrid histidine kinase id=3644888 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative PAS/PAC sensor protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

11620..12507
DNA (888bp) protein (296aa)
phosphonate ABC transporter substrate-binding protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003605B95
phosphonate ABC transporter substrate-binding protein; K02044 phosphonate transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
phosphonate ABC transporter substrate-binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12633..12872
DNA (240bp) protein (80aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=14426236 bin=bin1_lowGC species=Belliella baltica genus=Belliella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

12878..13216
DNA (339bp) protein (113aa)
PemK family protein Tax=RBG_16_Nitrospirae_64_22_curated
PemK family protein id=14426235 bin=bin1_lowGC species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin1_lowGC organism_group=Unknown_CP
PemK family protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13253..13654)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
PilT protein domain protein id=2961600 bin=GWC2_Methylomirabilis_70_16 species=Synechococcus sp. CB0101 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13651..13869)
DNA (219bp) protein (73aa)
CopG family transcripitonal regulator n=1 Tax=unclassified candidate division KSB1 RepID=UPI00037E408C
Ribbon-helix-helix protein Tax=RBG_16_Nitrospirae_64_22_curated
Ribbon-helix-helix protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13922..14488)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFG1_9BACT
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2278_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14570..15781)
DNA (1212bp) protein (404aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RBG_16_Nitrospirae_64_22_curated
Aspartate aminotransferase id=4202684 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
class I and II aminotransferase
Displaying 19 items

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