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RBG_16_NSX_64_22_RBG_16_scaffold_8770

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_8770_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1..153
DNA (153bp) protein (51aa)
Fe-S oxidoreductase n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L3N6_MAGSM
Fe-S oxidoreductase Tax=RBG_16_Nitrospirae_64_22_curated
Fe-S oxidoreductase
RBG_16_NSX_64_22_RBG_16_scaffold_8770_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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527..2041
DNA (1515bp) protein (505aa)
glutamate synthase (NADPH) small subunit (EC:1.4.1.13) Tax=RBG_16_Nitrospirae_64_22_curated
glutamate synthase (NADPH) small subunit (EC:1.4.1.13)
Iron-sulfur cluster-binding protein, GltD family n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AP73_CHLCH
RBG_16_NSX_64_22_RBG_16_scaffold_8770_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2702..2941
DNA (240bp) protein (80aa)
Sulfur relay protein TusC/DsrF n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DJ97_9GAMM
sulfur relay protein TusC/DsrF; K07236 tRNA 2-thiouridine synthesizing protein C Tax=RBG_16_Nitrospirae_64_22_curated
sulfur oxidoreductase
dsrE is in the gap Karthik Anantharaman (12/7/16)
RBG_16_NSX_64_22_RBG_16_scaffold_8770_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2967..3263
DNA (297bp) protein (99aa)
tusB_[H]; tRNA 5-methylaminomethyl-2-thiouridine synthase TusB Tax=RBG_16_Nitrospirae_64_22_curated
Sulfur relay protein TusB/DsrH id=4306740 bin=GWF2_Methylomirabilis_70_14 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dsrH; intracellular sulfur oxidation protein DsrH
RBG_16_NSX_64_22_RBG_16_scaffold_8770_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3349..4359)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCX4_GEOUR
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_8770_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4380..4724)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Thermus thermophilus JL-18 RepID=H9ZSZ5_THETH
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_8770_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4777..5115)
DNA (339bp) protein (113aa)
DNA polymerase beta domain protein region n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0N2_THEOJ
DNA polymerase beta domain-containing protein region Tax=RBG_16_Nitrospirae_64_22_curated
DNA polymerase beta domain-containing protein region
RBG_16_NSX_64_22_RBG_16_scaffold_8770_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(5241..8342)
DNA (3102bp) protein (1034aa)
nolG1; AcrB/AcrD/AcrF family efflux transporter inner membrane protein Tax=RBG_16_Nitrospirae_64_22_curated
Acriflavin resistance protein id=3922730 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
nolG1; AcrB/AcrD/AcrF family efflux transporter inner membrane protein
RBG_16_NSX_64_22_RBG_16_scaffold_8770_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(8343..9452)
DNA (1110bp) protein (370aa)
RND family efflux transporter MFP subunit Tax=RBG_16_Nitrospirae_64_22_curated
macA; acrolide-specific efflux protein MacA id=12554203 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RND family efflux transporter MFP subunit
RBG_16_NSX_64_22_RBG_16_scaffold_8770_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(9449..10096)
DNA (648bp) protein (216aa)
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator Tax=RBG_16_Nitrospirae_64_22_curated
Transcriptional regulator, TetR family id=4002245 bin=GWC2_Nitrospirae_57_13 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
TetR family transcriptional regulator
RBG_16_NSX_64_22_RBG_16_scaffold_8770_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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10259..11365
DNA (1107bp) protein (369aa)
alanine dehydrogenase n=1 Tax=Oceanimonas smirnovii RepID=UPI00035DA9E4
alanine dehydrogenase Tax=RBG_16_Nitrospirae_64_22_curated
alanine dehydrogenase
RBG_16_NSX_64_22_RBG_16_scaffold_8770_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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11447..12241
DNA (795bp) protein (265aa)
UbiD family decarboxylase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-] Tax=RBG_16_Nitrospirae_64_22_curated
UbiD family decarboxylase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CY62_HALOH
UbiD family decarboxylase
Displaying 12 items

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