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RBG_16_NSX_64_22_RBG_16_scaffold_11115

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_11115_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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117..593
DNA (477bp) protein (159aa)
tRNA-adenosine deaminase (EC:3.5.4.-) Tax=RBG_16_Nitrospirae_64_22_curated
tRNA-adenosine deaminase (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein id=3103262 bin=GWC2_Planctomycetes_45_44 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
RBG_16_NSX_64_22_RBG_16_scaffold_11115_trna_1
unknown

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668..755
DNA (88bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_11115_trna_2
unknown

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861..951
DNA (91bp)
transferRNA
RBG_16_NSX_64_22_RBG_16_scaffold_11115_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1122..1919
DNA (798bp) protein (266aa)
Peptidase, M23/M37 family protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR95_9BURK
Peptidase, M23/M37 family protein Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_11115_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(1970..2494)
DNA (525bp) protein (175aa)
Nuclease, putative n=2 Tax=Geobacter sulfurreducens RepID=D7AHY0_GEOSK
nuclease Tax=RBG_16_Nitrospirae_64_22_curated
nuclease
RBG_16_NSX_64_22_RBG_16_scaffold_11115_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(2520..2897)
DNA (378bp) protein (126aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_11115_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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3018..3140
DNA (123bp) protein (41aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_11115_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3137..4609)
DNA (1473bp) protein (491aa)
ldcC2; arginine decarboxylase Tax=RBG_16_Nitrospirae_64_22_curated
Arginine decarboxylase id=4830634 bin=GWC2_Nitrospirae_57_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
arginine decarboxylase
RBG_16_NSX_64_22_RBG_16_scaffold_11115_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4619..5542)
DNA (924bp) protein (308aa)
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) Tax=RBG_16_Nitrospirae_64_22_curated
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16)
Spermidine synthase id=4276299 bin=GWC2_Nitrospirae-rel_56_14 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RBG_16_NSX_64_22_RBG_16_scaffold_11115_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5508..5942)
DNA (435bp) protein (145aa)
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) (EC:4.1.1.50); K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=RBG_16_Nitrospirae_64_22_curated
S-adenosylmethionine decarboxylase (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme id=3604828 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
RBG_16_NSX_64_22_RBG_16_scaffold_11115_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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6176..6406
DNA (231bp) protein (77aa)
Transcriptional regulator, AsnC family n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GKU3_METPE
AsnC family transcriptional regulator Tax=RBG_16_Nitrospirae_64_22_curated
AsnC family transcriptional regulator
RBG_16_NSX_64_22_RBG_16_scaffold_11115_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

6388..7173
DNA (786bp) protein (262aa)
Peptidase C26 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUL8_RUBXD
peptidase C26; K07010 putative glutamine amidotransferase Tax=RBG_16_Nitrospirae_64_22_curated
peptidase C26
RBG_16_NSX_64_22_RBG_16_scaffold_11115_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(7170..7583)
DNA (414bp) protein (138aa)
response regulator receiver protein Tax=RBG_16_Nitrospirae_64_22_curated
histidine kinase
Response regulator receiver protein id=4695635 bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Displaying 13 items

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