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RBG_16_NSX_64_22_RBG_16_scaffold_2012

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_2012_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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2..1063
DNA (1062bp) protein (354aa)
trans-hexaprenyltranstransferase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RBG_16_Nitrospirae_64_22_curated
Polyprenyl-diphosphate synthase id=4910228 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
trans-hexaprenyltranstransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1071..1586
DNA (516bp) protein (172aa)
AMMECR1 domain protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XAC3_THEPJ
AMMECR1 domain-containing protein Tax=RBG_16_Nitrospirae_64_22_curated
AMMECR1 domain-containing protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1591..1947
DNA (357bp) protein (119aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2012_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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1944..2399
DNA (456bp) protein (152aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2012_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2617..3489)
DNA (873bp) protein (291aa)
type 12 methyltransferase Tax=RBG_16_Nitrospirae_64_22_curated
Putative methyltransferase id=4191411 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
type 12 methyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3489..4856)
DNA (1368bp) protein (456aa)
coenzyme F390 synthetase-like protein Tax=RBG_16_Nitrospirae_64_22_curated
Phenylacetate-CoA ligase id=4191417 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
coenzyme F390 synthetase-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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5034..6644
DNA (1611bp) protein (537aa)
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3] Tax=RBG_16_Nitrospirae_64_22_curated
histidine ammonia-lyase (EC:4.3.1.3)
histidine ammonia-lyase n=1 Tax=Salinispora arenicola RepID=UPI0003092224
RBG_16_NSX_64_22_RBG_16_scaffold_2012_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

7186..7473
DNA (288bp) protein (96aa)
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=RBG_16_Nitrospirae_64_22_curated
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta id=14425660 bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hupB; transcriptional dual regulator HU-beta
RBG_16_NSX_64_22_RBG_16_scaffold_2012_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(7549..9468)
DNA (1920bp) protein (640aa)
putative DnaQ family exonuclease/DinG family helicase; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003603ECB
DnaQ family exonuclease/DinG family helicase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

9535..9816
DNA (282bp) protein (94aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein id=4792407 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(9872..10876)
DNA (1005bp) protein (335aa)
gmd; GDP-D-mannose dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Nitrospirae_64_22_curated
bhy:BHWA1_00145 gmd; GDP-D-mannose dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] id=19451 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
gmd; GDP-D-mannose dehydratase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(11079..12074)
DNA (996bp) protein (332aa)
cation diffusion facilitator family transporter Tax=RBG_16_Nitrospirae_64_22_curated
mba:Mbar_A1220 cation efflux family protein id=1246516 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
cation diffusion facilitator family transporter
RBG_16_NSX_64_22_RBG_16_scaffold_2012_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12067..12924)
DNA (858bp) protein (286aa)
Methyltransferase type 11 n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U9T6_9CYAN
type 11 methyltransferase Tax=RBG_16_Nitrospirae_64_22_curated
type 11 methyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12940..13218)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GV41_SORC5
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13303..13743)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Bacillus sp. M 2-6 RepID=I4VAY2_9BACI
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(13773..14096)
DNA (324bp) protein (108aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=14429666 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(14098..15099)
DNA (1002bp) protein (334aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] Tax=RBG_16_Nitrospirae_64_22_curated
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G212_9GAMM
RBG_16_NSX_64_22_RBG_16_scaffold_2012_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(15165..16283)
DNA (1119bp) protein (373aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RBG_16_Nitrospirae_64_22_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) id=14627638 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16280..16723)
DNA (444bp) protein (148aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RBG_16_Nitrospirae_64_22_curated
Peptidase M50, putative membrane-associated zinc metallopeptidase id=4952313 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
membrane-associated zinc metalloprotease
RBG_16_NSX_64_22_RBG_16_scaffold_2012_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

16987..17781
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AFQ0_9CLOT
Uncharacterized protein Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_2012_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(17816..18985)
DNA (1170bp) protein (390aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RBG_16_Nitrospirae_64_22_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADC2_THEID
RBG_16_NSX_64_22_RBG_16_scaffold_2012_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19143..19937)
DNA (795bp) protein (265aa)
cdsA; phosphatidate cytidylyltransferase (CDP-diacylglycerol synthase) (EC:2.7.7.41) Tax=RBG_16_Nitrospirae_64_22_curated
cdsA; phosphatidate cytidylyltransferase (CDP-diacylglycerol synthase) (EC:2.7.7.41)
Phosphatidate cytidylyltransferase id=3388813 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RBG_16_NSX_64_22_RBG_16_scaffold_2012_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19927..20730)
DNA (804bp) protein (268aa)
UDP diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RBG_16_Nitrospirae_64_22_curated
UDP diphosphate synthase (EC:2.5.1.31)
UDP pyrophosphate synthase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6CFB8
RBG_16_NSX_64_22_RBG_16_scaffold_2012_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20735..22582)
DNA (1848bp) protein (616aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=4399090 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(22870..23709)
DNA (840bp) protein (280aa)
extracellular tungstate binding protein; K05772 tungstate transport system substrate-binding protein Tax=RBG_16_Nitrospirae_64_22_curated
Extracellular tungstate binding protein id=2281105 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
extracellular tungstate binding protein
RBG_16_NSX_64_22_RBG_16_scaffold_2012_26
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23729..24457)
DNA (729bp) protein (243aa)
pstB2; phosphate import ATP-binding protein PstB (EC:3.6.3.27) Tax=RBG_16_Nitrospirae_64_22_curated
pstB2; phosphate import ATP-binding protein PstB (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJ49_THEPS
RBG_16_NSX_64_22_RBG_16_scaffold_2012_27
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(24590..25291)
DNA (702bp) protein (234aa)
permease component of tungstate ABC transporter; K05773 tungstate transport system permease protein Tax=RBG_16_Nitrospirae_64_22_curated
Permease component of tungstate ABC transporter id=4588659 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
tungstate ABC transporter permease
RBG_16_NSX_64_22_RBG_16_scaffold_2012_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25373..26230)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00035D7993
UbiE/COQ5 methyltransferase Tax=RBG_16_Nitrospirae_64_22_curated
UbiE/COQ5 methyltransferase
RBG_16_NSX_64_22_RBG_16_scaffold_2012_29
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26738..26899
DNA (162bp) protein (54aa)
fer; putative ferredoxin; K05337 ferredoxin Tax=RBG_16_Nitrospirae_64_22_curated
fer; putative ferredoxin; K05337 ferredoxin id=1242375 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
RBG_16_NSX_64_22_RBG_16_scaffold_2012_30
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

26979..28889
DNA (1911bp) protein (637aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] Tax=RBG_16_Nitrospirae_64_22_curated
ATP-dependent DNA helicase RecQ id=4932760 bin=GWA2_Elusimicrobia_69_24 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ATP-dependent DNA helicase RecQ
Displaying items 1-30 of 38 in total

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