ggKbase home page

RBG_16_WS3_71_46_RBG_16_scaffold_2095

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_2095_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2..892)
DNA (891bp) protein (297aa)
Histone deacetylase superfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A43_SOLUE id=5224414 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histone deacetylase superfamily protein Tax=RBG_16_RIF_WS3X_71_46_curated
histone deacetylase superfamily protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

964..2196
DNA (1233bp) protein (411aa)
id=5224415 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5224415 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2196..2936
DNA (741bp) protein (247aa)
ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67NE2_SYMTH id=5224416 bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter ATP-binding protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2972..3877)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DZ78_9MICO id=5224417 bin=16ft_combo_ws3_JS1 species=Tetrasphaera elongata genus=Tetrasphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3874..4521)
DNA (648bp) protein (216aa)
Redox-sensing transcriptional repressor rex n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A498_GEMAT id=5224418 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RBG_16_RIF_WS3X_71_46_curated
redox-sensing transcriptional repressor Rex
RBG_16_WS3_71_46_RBG_16_scaffold_2095_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(4623..7133)
DNA (2511bp) protein (837aa)
DNA gyrase subunit A n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A2W9_MELRP id=5224419 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA gyrase subunit A Tax=RBG_16_RIF_WS3X_71_46_curated
DNA gyrase subunit A
RBG_16_WS3_71_46_RBG_16_scaffold_2095_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7174..7767)
DNA (594bp) protein (198aa)
alias=16ft_combo_ws3_scaffold_2095_7 id=24427576 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2095_7 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2095_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7767..7919)
DNA (153bp) protein (51aa)
type IIA topoisomerase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RBG_16_RIF_WS3X_71_46_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Bacillus methanolicus PB1 RepID=I3E0W9_BACMT id=5224421 bin=16ft_combo_ws3_JS1 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7916..9712)
DNA (1797bp) protein (599aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RBG_16_RIF_WS3X_71_46_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IA14_METCZ id=5224422 bin=16ft_combo_ws3_JS1 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9709..10008)
DNA (300bp) protein (100aa)
hypothetical protein id=24427574 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinosynnema mirum genus=Actinosynnema taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10012..11160)
DNA (1149bp) protein (383aa)
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=24427573 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RBG_16_RIF_WS3X_71_46_curated
DNA polymerase III, beta subunit
RBG_16_WS3_71_46_RBG_16_scaffold_2095_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11514..12896)
DNA (1383bp) protein (461aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RA69_AMMDK id=5224425 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RBG_16_RIF_WS3X_71_46_curated
chromosomal replication initiator protein DnaA
RBG_16_WS3_71_46_RBG_16_scaffold_2095_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13405..14049)
DNA (645bp) protein (215aa)
alias=16ft_combo_ws3_scaffold_2095_13 id=24427571 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2095_13 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2095_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14145..15023)
DNA (879bp) protein (293aa)
hypothetical protein; K06976 id=24427570 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K06976 Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15034..15777)
DNA (744bp) protein (248aa)
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein id=24427569 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter
RBG_16_WS3_71_46_RBG_16_scaffold_2095_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15777..17474)
DNA (1698bp) protein (566aa)
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein id=24427568 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
binding-protein dependent transport system inner membrane protein
RBG_16_WS3_71_46_RBG_16_scaffold_2095_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17741..18121
DNA (381bp) protein (127aa)
id=5224430 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5224430 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18271..18609)
DNA (339bp) protein (113aa)
Class I peptide chain release factor n=3 Tax=Anaeromyxobacter RepID=B4UBN2_ANASK id=5224431 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
class I peptide chain release factor Tax=RBG_16_RIF_WS3X_71_46_curated
class I peptide chain release factor
RBG_16_WS3_71_46_RBG_16_scaffold_2095_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18847..20247
DNA (1401bp) protein (467aa)
pqqL3; M16 family peptidase id=24427566 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pqqL3; M16 family peptidase Tax=RBG_16_RIF_WS3X_71_46_curated
pqqL3; M16 family peptidase
RBG_16_WS3_71_46_RBG_16_scaffold_2095_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

20277..21653
DNA (1377bp) protein (459aa)
M16 family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RBG_16_RIF_WS3X_71_46_curated
M16 family peptidase (EC:3.4.24.-)
Peptidase, M16 (Pitrilysin) family n=2 Tax=Myxococcus RepID=Q1D624_MYXXD id=5224433 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

21765..22946
DNA (1182bp) protein (394aa)
Permeases of the major facilitator superfamily n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R9S3_THETN id=5224434 bin=16ft_combo_ws3_JS1 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ProP6; major facilitator superfamily permease Tax=RBG_16_RIF_WS3X_71_46_curated
ProP6; major facilitator superfamily permease
RBG_16_WS3_71_46_RBG_16_scaffold_2095_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22927..24018
DNA (1092bp) protein (364aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RBG_16_RIF_WS3X_71_46_curated
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3R9_DESAT id=5224435 bin=16ft_combo_ws3_JS1 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2095_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24174..24461)
DNA (288bp) protein (96aa)
alias=16ft_combo_ws3_scaffold_2095_23 id=24427562 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2095_23 Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 23 items

View Taxonomy