ggKbase home page

RBG_16_WS3_71_46_RBG_16_scaffold_6973

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_6973_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1..2385)
DNA (2385bp) protein (795aa)
Glycoside hydrolase family 57 protein n=1 Tax=Thermococcus sp. CL1 RepID=I3ZTM1_9EURY id=5225499 bin=16ft_combo_ws3_JS1 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycoside hydrolase family 57 protein Tax=RBG_16_RIF_WS3X_71_46_curated
glycoside hydrolase family 57 protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2520..5702)
DNA (3183bp) protein (1061aa)
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RBG_16_RIF_WS3X_71_46_curated
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=24506371 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
AcrB/AcrD/AcrF family protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5699..6913)
DNA (1215bp) protein (405aa)
Putative Multidrug efflux transporter, membrane fusion protein n=1 Tax=Candidatus Nitrospira defluvii PF75_9BACT">RepID=D8PF75_9BACT id=5225502 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative multidrug efflux transporter membrane fusion protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative multidrug efflux transporter membrane fusion protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7052..7876)
DNA (825bp) protein (275aa)
Methyltransferase type 11 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZQ7_9GAMM id=5225503 bin=16ft_combo_ws3_JS1 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
type 12 methyltransferase Tax=RBG_16_RIF_WS3X_71_46_curated
type 12 methyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_6973_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7873..8049)
DNA (177bp) protein (59aa)
alias=16ft_combo_ws3_scaffold_6973_6 id=24506368 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_6973_6 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8222..10147
DNA (1926bp) protein (642aa)
Peptidase M56, BlaR1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AL8_SOLUE id=5225505 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Peptidase M56, BlaR1 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10263..10670
DNA (408bp) protein (136aa)
OmpR; response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=24506364 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
OmpR; response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RBG_16_RIF_WS3X_71_46_curated
OmpR; response regulator
RBG_16_WS3_71_46_RBG_16_scaffold_6973_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10682..14434)
DNA (3753bp) protein (1251aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT id=5225507 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14434..15528)
DNA (1095bp) protein (365aa)
peptidase M24 id=24536414 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Streptomyces griseoaurantiacus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M24 Tax=RBG_16_RIF_WS3X_71_46_curated
ectoine utilization protein EutD
RBG_16_WS3_71_46_RBG_16_scaffold_6973_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15639..17204
DNA (1566bp) protein (522aa)
Oligopeptide ABC transporter, substrate-binding protein n=15 Tax=Rhizobium RepID=B3PVI3_RHIE6 id=5225509 bin=16ft_combo_ws3_JS1 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
oppA; oligopeptide ABC transporter substrate-binding protein OppA Tax=RBG_16_RIF_WS3X_71_46_curated
oppA; oligopeptide ABC transporter substrate-binding protein OppA
RBG_16_WS3_71_46_RBG_16_scaffold_6973_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17394..22106
DNA (4713bp) protein (1571aa)
FG-GAP repeat protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWF1_9BACT id=5224034 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Cell surface protein Tax=RBG_16_RIF_WS3X_71_46_curated
Cell surface protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22259..23731
DNA (1473bp) protein (491aa)
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RBG_16_RIF_WS3X_71_46_curated
Glutamate--tRNA ligase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBP8_AMMDK id=5225512 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glutamyl-tRNA synthetase
RBG_16_WS3_71_46_RBG_16_scaffold_6973_trna_1
unknown

Not on your lists

23799..23869
DNA (71bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_6973_trna_2
unknown

Not on your lists

24073..24145
DNA (73bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_6973_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24467..24682
DNA (216bp) protein (72aa)
id=5225513 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225513 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24781..25185
DNA (405bp) protein (135aa)
id=5225514 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225514 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25360..26598
DNA (1239bp) protein (413aa)
site-specific DNA-methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] Tax=RBG_16_RIF_WS3X_71_46_curated
Cytosine-specific methyltransferase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YIL1_LYNSP id=5225515 bin=16ft_combo_ws3_JS1 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
site-specific DNA-methyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_6973_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

26568..27419
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YIL0_LYNSP id=5225516 bin=16ft_combo_ws3_JS1 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
restriction endonuclease Tax=RBG_16_RIF_WS3X_71_46_curated
restriction endonuclease
RBG_16_WS3_71_46_RBG_16_scaffold_6973_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

27634..27927
DNA (294bp) protein (98aa)
id=5225517 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225517 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

27937..28179
DNA (243bp) protein (81aa)
id=5225518 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225518 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28176..28982
DNA (807bp) protein (269aa)
id=5225519 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225519 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

29058..29351
DNA (294bp) protein (98aa)
id=5225520 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225520 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

29341..30231
DNA (891bp) protein (297aa)
Phage major capsid protein, HK97 family n=1 Tax=Marichromatium purpuratum 984 RepID=F9U4Q2_MARPU id=5225521 bin=16ft_combo_ws3_JS1 species=Marichromatium purpuratum genus=Marichromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

30249..31268
DNA (1020bp) protein (340aa)
Phage major capsid protein, HK97 family n=1 Tax=Sphingobium sp. AP49 RepID=J2CSE7_9SPHN id=5225522 bin=16ft_combo_ws3_JS1 species=Sphingobium sp. AP49 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

31975..32340
DNA (366bp) protein (122aa)
id=5225523 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225523 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

32748..33152
DNA (405bp) protein (135aa)
id=5225524 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225524 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33488..34468
DNA (981bp) protein (327aa)
Integrase n=1 Tax=Marinobacter hydrocarbonoclasticus ATCC 49840 RepID=H8W598_MARHY id=5225525 bin=16ft_combo_ws3_JS1 species=Marinobacter hydrocarbonoclasticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
integrase Tax=RBG_16_RIF_WS3X_71_46_curated
integrase
RBG_16_WS3_71_46_RBG_16_scaffold_6973_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(34508..35029)
DNA (522bp) protein (174aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=uncultured gamma proteobacterium HF4000_48E10 RepID=E7C8T5_9GAMM id=5225526 bin=16ft_combo_ws3_JS1 species=uncultured gamma proteobacterium HF4000_48E10 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
resolvase domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
resolvase domain-containing protein
RBG_16_WS3_71_46_RBG_16_scaffold_6973_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(35225..36466)
DNA (1242bp) protein (414aa)
id=5225527 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225527 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_6973_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

37010..37378
DNA (369bp) protein (123aa)
hypothetical protein RetlC8_18299 n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI0001908A68 id=5225528 bin=16ft_combo_ws3_JS1 species=Rhizobium etli genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein RetlC8_18299 Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 32 in total

View Taxonomy