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RBG_16_WS3_71_46_RBG_16_scaffold_9520

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_9520_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3..1574
DNA (1572bp) protein (524aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24437569 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1775..2512)
DNA (738bp) protein (246aa)
hypothetical protein id=24437570 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2558..2893)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC24_SPISS id=5225877 bin=16ft_combo_ws3_JS1 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Putative uncharacterized protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2906..3142)
DNA (237bp) protein (79aa)
alias=16ft_combo_ws3_scaffold_9520_5 id=24437572 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_5 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3132..3629)
DNA (498bp) protein (166aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=24437573 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
sigW3; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_WS3X_71_46_curated
sigW3; RNA polymerase sigma factor
RBG_16_WS3_71_46_RBG_16_scaffold_9520_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4033..4275)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WYC8_RHOS5 id=5225880 bin=16ft_combo_ws3_JS1 species=Rhodobacter sphaeroides genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4542..6830
DNA (2289bp) protein (763aa)
phosphotransferase domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
phosphotransferase domain-containing protein id=24437575 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Clostridium celatum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7119..7490)
DNA (372bp) protein (124aa)
id=5225883 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225883 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7505..7738)
DNA (234bp) protein (78aa)
hypothetical protein id=24437577 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7735..8466)
DNA (732bp) protein (244aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J9T6_FRASU id=5225885 bin=16ft_combo_ws3_JS1 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_WS3X_71_46_curated
ECF subfamily RNA polymerase sigma-24 subunit
RBG_16_WS3_71_46_RBG_16_scaffold_9520_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8657..9652
DNA (996bp) protein (332aa)
CHRD domain containing protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZK7_HALH1 id=5225886 bin=16ft_combo_ws3_JS1 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CHRD domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
CHRD domain-containing protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9818..12118
DNA (2301bp) protein (767aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24437579 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12383..13195)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M0V8_9CYAN id=5225889 bin=16ft_combo_ws3_JS1 species=Xenococcus sp. PCC 7305 genus=Xenococcus taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
small molecule metabolism; degradation Tax=RBG_16_RIF_WS3X_71_46_curated
short chain dehydrogenase family protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13219..13797)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NIV1_ROSCS id=5225890 bin=16ft_combo_ws3_JS1 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13794..14081)
DNA (288bp) protein (96aa)
alias=16ft_combo_ws3_scaffold_9520_18 id=24437582 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_18 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14194..14685)
DNA (492bp) protein (164aa)
alias=16ft_combo_ws3_scaffold_9520_19 id=24437583 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_19 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14975..16114)
DNA (1140bp) protein (380aa)
Glr2547 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NHI8_GLOVI id=5225893 bin=16ft_combo_ws3_JS1 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
interphotoreceptor retinoid-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
interphotoreceptor retinoid-binding protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16111..16773)
DNA (663bp) protein (221aa)
TetR family transcriptional regulator id=24437585 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TetR family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
TetR family transcriptional regulator
RBG_16_WS3_71_46_RBG_16_scaffold_9520_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16971..18440)
DNA (1470bp) protein (490aa)
Catalase n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CLM6_ALCDB id=5225895 bin=16ft_combo_ws3_JS1 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
catalase Tax=RBG_16_RIF_WS3X_71_46_curated
catalase
RBG_16_WS3_71_46_RBG_16_scaffold_9520_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18911..19399)
DNA (489bp) protein (163aa)
alias=16ft_combo_ws3_scaffold_9520_23 Tax=RBG_16_RIF_WS3X_71_46_curated
alias=16ft_combo_ws3_scaffold_9520_23 id=24437587 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RBG_16_WS3_71_46_RBG_16_scaffold_9520_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19411..19644)
DNA (234bp) protein (78aa)
alias=16ft_combo_ws3_scaffold_9520_24 id=24437588 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_24 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19798..20166)
DNA (369bp) protein (123aa)
glyoxalase/bleomycin resistance protein/dioxygenase id=24437589 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RBG_16_RIF_WS3X_71_46_curated
glyoxalase/bleomycin resistance protein/dioxygenase
RBG_16_WS3_71_46_RBG_16_scaffold_9520_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20273..20839)
DNA (567bp) protein (189aa)
alias=16ft_combo_ws3_scaffold_9520_26 id=24437590 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_26 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_9520_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20950..21531)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain FRC-32) RepID=B9M8V0_GEOSF id=5225900 bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21796..22266)
DNA (471bp) protein (157aa)
hypothetical protein id=24437592 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_9520_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(22411..22893)
DNA (483bp) protein (161aa)
alias=16ft_combo_ws3_scaffold_9520_29 id=24437593 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_9520_29 Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 26 items

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