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RBG_16_WS3_71_46_RBG_16_scaffold_5582

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_5582_trna_2
unknown

Not on your lists

comp(2..74)
DNA (73bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_5582_trna_1
unknown

Not on your lists

comp(150..222)
DNA (73bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_5582_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(340..2229)
DNA (1890bp) protein (630aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHY3_ANADF id=5225270 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multi-sensor signal transduction histidine kinase Tax=RBG_16_RIF_WS3X_71_46_curated
multi-sensor signal transduction histidine kinase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2480..2785
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQV9_9BACT id=5225271 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2835..3254)
DNA (420bp) protein (140aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Thioesterase superfamily protein n=3 Tax=Anaeromyxobacter RepID=B4UDN2_ANASK id=5225272 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
4-hydroxybenzoyl-CoA thioesterase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3254..4144)
DNA (891bp) protein (297aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Lipid A biosynthesis acyltransferase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U7K6_MYXSD id=5225273 bin=16ft_combo_ws3_JS1 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lipid A biosynthesis acyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4141..5058)
DNA (918bp) protein (306aa)
DNA protecting protein DprA n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIP9_DESK7 id=5225274 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA protecting protein DprA; K04096 DNA processing protein Tax=RBG_16_RIF_WS3X_71_46_curated
DNA protecting protein DprA
RBG_16_WS3_71_46_RBG_16_scaffold_5582_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5036..5710)
DNA (675bp) protein (225aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CVR0_METMJ id=5225275 bin=16ft_combo_ws3_JS1 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PBS lyase HEAT domain protein repeat-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_5582_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5700..6713)
DNA (1014bp) protein (338aa)
GTPase obg n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUU6_9BACT id=5225276 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
GTP-binding protein Obg/CgtA; K03979 GTP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
GTP-binding protein Obg/CgtA
RBG_16_WS3_71_46_RBG_16_scaffold_5582_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6823..8736)
DNA (1914bp) protein (638aa)
aco; aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RBG_16_RIF_WS3X_71_46_curated
Aconitate hydratase, putative n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TD32_HELMI id=5225277 bin=16ft_combo_ws3_JS1 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aco; aconitate hydratase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8753..9064)
DNA (312bp) protein (104aa)
Regulatory protein, FmdB family n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SS21_PLAL2 id=5225278 bin=16ft_combo_ws3_JS1 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
FmdB family regulatory protein Tax=RBG_16_RIF_WS3X_71_46_curated
FmdB family regulatory protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9119..10135)
DNA (1017bp) protein (339aa)
phosphate acetyltransferase id=24601145 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
phosphate acetyltransferase Tax=RBG_16_RIF_WS3X_71_46_curated
phosphate acetyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10132..10695)
DNA (564bp) protein (188aa)
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RBG_16_RIF_WS3X_71_46_curated
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LVP3_DESBD id=5225280 bin=16ft_combo_ws3_JS1 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_5582_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10685..11320)
DNA (636bp) protein (212aa)
Putative methylase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FHL8_SORC5 id=5225281 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11522..12166)
DNA (645bp) protein (215aa)
id=5225282 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225282 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_5582_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12163..12978)
DNA (816bp) protein (272aa)
id=5225283 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225283 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_5582_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12975..13511)
DNA (537bp) protein (179aa)
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71] Tax=RBG_16_RIF_WS3X_71_46_curated
Shikimate kinase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=AROK_SYMTH id=5225284 bin=16ft_combo_ws3_JS1 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
shikimate kinase
RBG_16_WS3_71_46_RBG_16_scaffold_5582_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13650..14993)
DNA (1344bp) protein (448aa)
Type IV pilus secretin PilQ n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0D9_9BACT id=5225285 bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
type II and III secretion system protein, secretin; K02666 type IV pilus assembly protein PilQ Tax=RBG_16_RIF_WS3X_71_46_curated
type II and III secretion system protein, secretin
RBG_16_WS3_71_46_RBG_16_scaffold_5582_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14980..15807)
DNA (828bp) protein (276aa)
pldB; lysophospholipase L2; K01048 lysophospholipase [EC:3.1.1.5] id=24445598 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Boreogadus saida genus=Boreogadus taxon_order=Gadiformes taxon_class=Actinopterygii phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pldB; lysophospholipase L2; K01048 lysophospholipase [EC:3.1.1.5] Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_5582_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15807..16436)
DNA (630bp) protein (210aa)
Pilus assembly protein, PilO n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AMQ1_PELPD id=5225287 bin=16ft_combo_ws3_JS1 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pilus assembly protein, PilO; K02664 type IV pilus assembly protein PilO Tax=RBG_16_RIF_WS3X_71_46_curated
pilus assembly protein, PilO
RBG_16_WS3_71_46_RBG_16_scaffold_5582_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16446..17015)
DNA (570bp) protein (190aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN id=24445596 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RBG_16_RIF_WS3X_71_46_curated
fimbrial assembly family protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17012..18067)
DNA (1056bp) protein (352aa)
Type IV pilus biogenesis ATPase PilM n=2 Tax=Geobacter sulfurreducens RepID=D7AKM5_GEOSK id=5225289 bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pilM; type IV pilus biogenesis ATPase PilM; K02662 type IV pilus assembly protein PilM Tax=RBG_16_RIF_WS3X_71_46_curated
pilM; type IV pilus biogenesis ATPase PilM
RBG_16_WS3_71_46_RBG_16_scaffold_5582_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18268..19035)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=2 Tax=Anaeromyxobacter RepID=B4UCT3_ANASK id=5225290 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19032..19796)
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JCZ6_ANAD2 id=5225291 bin=16ft_combo_ws3_JS1 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_5582_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19793..20830)
DNA (1038bp) protein (346aa)
ABC transporter ATPase (EC:3.6.3.-); K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter ATPase (EC:3.6.3.-)
ABC-type transport system, ATPase component n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIN4_9BACT id=5225292 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Displaying 25 items

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