ggKbase home page

RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_1
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(1..1113)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A39E64
polyferredoxin Tax=RBG_16_Zixibacteria_43_9_curated
polyferredoxin
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_2
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(1293..2210)
DNA (918bp) protein (306aa)
cytoplasmic protein Tax=RBG_16_Zixibacteria_43_9_curated
Hypothetical cytosolic protein id=4889232 bin=GWC2_Nitrospirae-rel_56_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cytoplasmic protein
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_3
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(2207..3163)
DNA (957bp) protein (319aa)
hypothetical protein Tax=RBG_16_Zixibacteria_43_9_curated
hypothetical protein id=24418202 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_4
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(3169..4191)
DNA (1023bp) protein (341aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI000371894E
hypothetical protein Tax=RBG_16_Zixibacteria_43_9_curated
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_5
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(4216..4884)
DNA (669bp) protein (223aa)
cytochrome C biogenesis protein, transmembrane region; K06196 cytochrome c-type biogenesis protein Tax=RBG_16_Zixibacteria_43_9_curated
Cytochrome c biogenesis protein, transmembrane region id=1251177 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
cytochrome C biogenesis protein, transmembrane region
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_6
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(5147..5977)
DNA (831bp) protein (277aa)
transcriptional regulatory protein Tax=RBG_16_Zixibacteria_43_9_curated
Response regulator receiver protein id=2170734 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
transcriptional regulator
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_7
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(5998..6804)
DNA (807bp) protein (269aa)
rhomboid family protein Tax=RBG_16_Zixibacteria_43_9_curated
Rhomboid family protein id=1251408 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
rhomboid family protein
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_8
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(6923..7708)
DNA (786bp) protein (262aa)
hypothetical protein Tax=RBG_16_Zixibacteria_43_9_curated
Uncharacterized protein id=4636764 bin=GWF2_Ignavibacteria_35_20 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_9
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(7748..8824)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L822_9BACT
hypothetical protein Tax=RBG_16_Zixibacteria_43_9_curated
hypothetical protein
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_10
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(8844..9713)
DNA (870bp) protein (290aa)
UbiA prenyltransferase Tax=RBG_16_Zixibacteria_43_9_curated
Putative conserved membrane protein id=1250885 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
UbiA prenyltransferase
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_11
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(9706..10545)
DNA (840bp) protein (280aa)
Polysaccharide deacetylase n=1 Tax=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) RepID=A1U171_MARAV
polysaccharide deacetylase Tax=RBG_16_Zixibacteria_43_9_curated
polysaccharide deacetylase
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_12
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(10560..11276)
DNA (717bp) protein (239aa)
capsular polysaccharide biosynthesis protein (EC:2.7.10.2)
Capsular exopolysaccharide family protein n=1 Tax=Paenisporosarcina sp. HGH0030 RepID=S2XNJ3_9BACL
capsular polysaccharide biosynthesis protein Tax=RBG_16_Zixibacteria_43_9_curated
RBG_16_Zixibacteria_43_9_RBG_16_scaffold_4422_13
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(11299..11667)
DNA (369bp) protein (123aa)
lipopolysaccharide biosynthesis protein Tax=RBG_16_Zixibacteria_43_9_curated
capsular exopolysaccharide biosynthesis protein id=24536401 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
polysaccharide chain length determinant protein
Displaying 13 items

View Taxonomy