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RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_1
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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124..366
DNA (243bp) protein (81aa)
Translation initiation factor IF-1 n=1 Tax=mine drainage metagenome RepID=T0ZP94_9ZZZZ
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
translation initiation factor IF-1
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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627..1016
DNA (390bp) protein (130aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
hypothetical protein id=5801916 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
30S ribosomal protein S13
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_3
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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1237..1698
DNA (462bp) protein (154aa)
30S ribosomal protein S11 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037D367B
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
30S ribosomal protein S11
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_4
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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1817..2434
DNA (618bp) protein (206aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
30S ribosomal protein S4 id=3013123 bin=GWC1_OD1_38_17 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
30S ribosomal protein S4
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_5
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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2526..3473
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035FE435
rpoA; DNA-directed RNA polymerase subunit alpha Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
DNA-directed RNA polymerase subunit alpha
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_6
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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3514..3858
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035D107D
rplQ; 50S ribosomal protein L17 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
50S ribosomal protein L17
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_7
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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3888..4247
DNA (360bp) protein (120aa)
50S ribosomal protein L13 n=1 Tax=Leptotrichia sp. oral taxon 215 str. W9775 RepID=U2T0A2_9FUSO
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
rplM; 50S ribosomal protein L13
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_8
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists


4414..4881
DNA (468bp) protein (156aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
30S ribosomal protein S9 id=3013137 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
30S ribosomal protein S9
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_9
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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comp(4912..5901)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037BDF9D
PEGA protein
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_10
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

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comp(5908..6162)
DNA (255bp) protein (85aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_11
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(6159..6356)
DNA (198bp) protein (66aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_12
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

6506..6730
DNA (225bp) protein (75aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
RIFCSPHIGHO2_01_FULL_OD1_40_12b_rifcsphigho2_01_scaffold_29303_13
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

7146..8408
DNA (1263bp) protein (421aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=4241929 bin=GWC2_OD1_43_27 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
UDP-N-acetylglucosamine enolpyruvyl transferase
Displaying 13 items

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