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RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_1
RHI_OD1_44_17, Parcubacteria, Bacteria

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1..189
DNA (189bp) protein (63aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_2
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

274..1095
DNA (822bp) protein (274aa)
HhH-GPD family protein; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
HhH-GPD family protein; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Glycosylase n=1 Tax=planctomycete KSU-1 RepID=I3IKS9_9PLAN
Glycosylase n=1 Tax=planctomycete KSU-1 RepID=I3IKS9_9PLAN
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_3
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

1092..2228
DNA (1137bp) protein (379aa)
queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hor:Hore_12290 queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=133946 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hor:Hore_12290 queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=133946 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_4
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

2225..3262
DNA (1038bp) protein (346aa)
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] id=15190397 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] id=15190397 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_5
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3280..3459
DNA (180bp) protein (60aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_6
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

3611..4000
DNA (390bp) protein (130aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_7
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

4284..4736
DNA (453bp) protein (151aa)
phospholipid-binding protein, pbp family; K06910 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
phospholipid-binding protein, pbp family; K06910 Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Phospholipid-binding protein, PBP family id=4870034 bin=GWA2_CPR4_42_17 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Phospholipid-binding protein, PBP family id=4870034 bin=GWA2_CPR4_42_17 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_8
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists


4733..5053
DNA (321bp) protein (107aa)
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Methionine--tRNA ligase id=1955931 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Methionine--tRNA ligase id=1955931 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_9
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

5071..5289
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein
hypothetical protein
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_10
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

5376..6224
DNA (849bp) protein (283aa)
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
apurinic endonuclease Apn1 (EC:3.1.21.2)
apurinic endonuclease Apn1 (EC:3.1.21.2)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_11
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

6228..6824
DNA (597bp) protein (199aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Thermostable uracil-DNA glycosylase id=1947702 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Thermostable uracil-DNA glycosylase id=1947702 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_12
RHI_OD1_44_17, Parcubacteria, Bacteria

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comp(6849..7343)
DNA (495bp) protein (165aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_13
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

comp(7590..7916)
DNA (327bp) protein (109aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_14
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

comp(8066..8236)
DNA (171bp) protein (57aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_15
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

comp(8382..8528)
DNA (147bp) protein (49aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_16
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

comp(8689..9204)
DNA (516bp) protein (172aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_17
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

9477..11510
DNA (2034bp) protein (678aa)
UvrABC system protein B n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWL8_9BACT
UvrABC system protein B n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWL8_9BACT
Excinuclease ABC subunit B Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Excinuclease ABC subunit B Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_18
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

11615..14152
DNA (2538bp) protein (846aa)
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Excinuclease ABC, subunit A id=2072705 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
Excinuclease ABC, subunit A id=2072705 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_19
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

14226..14900
DNA (675bp) protein (225aa)
superoxide dismutase Mn type (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
superoxide dismutase Mn type (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
superoxide dismutase Mn type (EC:1.15.1.1)
superoxide dismutase Mn type (EC:1.15.1.1)
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_20
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

14936..15097
DNA (162bp) protein (54aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_21
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

15105..15350
DNA (246bp) protein (82aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_22
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

15350..16642
DNA (1293bp) protein (431aa)
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Excinuclease ABC, C subunit domain protein id=1263248 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Excinuclease ABC, C subunit domain protein id=1263248 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_23
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

16882..17277
DNA (396bp) protein (132aa)
Repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX) n=1 Tax=uncultured bacterium RepID=K2EYU1_9BACT
Repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX) n=1 Tax=uncultured bacterium RepID=K2EYU1_9BACT
repressor in the phenylacetic acid catabolism; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
repressor in the phenylacetic acid catabolism; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_24
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

17350..17559
DNA (210bp) protein (70aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
RIFCSPHIGHO2_12_FULL_OD1_44_17_rifcsphigho2_12_scaffold_4874_25
RHI_OD1_44_17, Parcubacteria, Bacteria

Not on your lists

17601..18083
DNA (483bp) protein (161aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_OD1_44_17_curated
Vitamin K epoxide reductase id=2787854 bin=GWA1_Kazan_50_15 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
Vitamin K epoxide reductase id=2787854 bin=GWA1_Kazan_50_15 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
Displaying 25 items

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