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RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_16918_19

Organism: Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_45_140

near complete RP 43 / 55 BSCG 47 / 51 ASCG 10 / 38
Location: comp(15120..15737)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000313|EMBL:KKU29523.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 205.0
  • Bit_score: 407
  • Evalue 9.90e-111
RNA polymerase, sigma-24 subunit, ECF subfamily protein id=3736405 bin=GWC2_OD1_43_27 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 47.5
  • Coverage: 183.0
  • Bit_score: 168
  • Evalue 5.50e-39
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 29.9
  • Coverage: 177.0
  • Bit_score: 81
  • Evalue 4.30e-13

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Taxonomy

Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 618
ATGGGCTATTTGAACACGAAAGATCCGCAAGAGTTGCCCGCTTCGCCGGAGCTTCAGCGAGGCGAGCCAGACGATGTGATTTTAAAAAAATCGGTGGCGAATCCGGCGCTTTTTTCTATTTTAATTGACAAATACCAGCTGCCTTTTGTGAGAAAGGCGATCGGAATTGTGCATTCCAAAGAAGAAGCCGAAGATATTGTACAGGAAGCTTTCACAAAAATTTATCTAAACGCCAAAAAATTCAAAAAACAGCCCGGAATTGAATTTAAAAGCTGGGCTTGGAGAATTTTGGTAAACACCTCGCTCACCCATTACCGCAAACTCAAAAAGACTTTCGGGGACGTCGGGTACTTGGATGAAATCTTGGCGGAAGGCGAAGACGCCGAAGCGCTTTTCGCGATGGAAAATACTTTAGATCGCGACGAAAACATCACCGAAGTCAGAGAAGCCATAAATAAAATGCCGTCCGAAGCCGCCGAACTTTTGCGCGCGCACTATGTTGATGACAGGCCCTACTCCGAAATCGCCAGAAAACACAAGATTTCCATAGGGGCGCTCAAGATGAAACTTTTTCGCGCGCGCAAAGTTATAAAAGATGTAATGGGTCCAGAGCTATAA
PROTEIN sequence
Length: 206
MGYLNTKDPQELPASPELQRGEPDDVILKKSVANPALFSILIDKYQLPFVRKAIGIVHSKEEAEDIVQEAFTKIYLNAKKFKKQPGIEFKSWAWRILVNTSLTHYRKLKKTFGDVGYLDEILAEGEDAEALFAMENTLDRDENITEVREAINKMPSEAAELLRAHYVDDRPYSEIARKHKISIGALKMKLFRARKVIKDVMGPEL*