ggKbase home page

RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1..801)
DNA (801bp) protein (267aa)
Branched-chain amino acid ABC transporter permease LivM n=1 Tax=Oceanibaculum indicum P24 RepID=K2J584_9PROT
branched chain amino acid ABC transporter inner membrane protein; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Inner-membrane translocator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(806..1744)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036CE0C1
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
inner-membrane translocator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1835..2617)
DNA (783bp) protein (261aa)
Branched-chain amino acid transport system n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CJ49_9RHOB
branched-chain amino acid ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
branched-chain amino acid ABC transporter ATPase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2631..4589)
DNA (1959bp) protein (653aa)
fadD3; AMP-dependent synthetase and ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
AMP-forming long-chain acyl-CoA synthetase id=3041073 bin=GWC2_Methylomirabilis_70_24 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
fadD3; AMP-dependent synthetase and ligase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4608..5405)
DNA (798bp) protein (266aa)
AtoA; acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
AtoA; acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit id=14627238 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AtoA; acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5604..6572)
DNA (969bp) protein (323aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5) id=14627239 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

6725..7048
DNA (324bp) protein (108aa)
id=14627240 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14627240 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7085..8431)
DNA (1347bp) protein (449aa)
short-chain fatty acid transporter; K02106 short-chain fatty acids transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
short-chain fatty acid transporter; K02106 short-chain fatty acids transporter id=14627241 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
short-chain fatty acid transporter
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8515..9285)
DNA (771bp) protein (257aa)
3-hydroxyacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
3-hydroxyacyl-CoA dehydrogenase id=14627242 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
3-hydroxyacyl-CoA dehydrogenase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9362..10507)
DNA (1146bp) protein (382aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) id=14626087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(10621..10953)
DNA (333bp) protein (111aa)
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=14626086 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11117..11455
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(11521..13158)
DNA (1638bp) protein (546aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14626084 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13171..14316)
DNA (1146bp) protein (382aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] id=14626083 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14317..15306)
DNA (990bp) protein (330aa)
electron transfer flavoprotein subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
electron transfer flavoprotein subunit alpha id=14626082 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
electron transfer flavoprotein subunit alpha
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15326..16105)
DNA (780bp) protein (260aa)
fixA; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit id=14626081 bin=bin7_NC10_sister species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
fixA; electron transfer flavoprotein subunit beta
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_14621_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16102..16683)
DNA (582bp) protein (194aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
Mannosyl-D-glycerate transport/metabolism system repressor mngR
Displaying 17 items

View Taxonomy