ggKbase home page

RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

96..1082
DNA (987bp) protein (329aa)
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein id=14627736 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
oligopeptide/dipeptide ABC transporter ATPase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1079..2137
DNA (1059bp) protein (353aa)
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative ABC transporter id=4119978 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine microorganism HF4000_010I05 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2474..3514
DNA (1041bp) protein (347aa)
histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Integral membrane sensor signal transduction histidine kinase id=1884757 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3507..4901
DNA (1395bp) protein (465aa)
sigma-54 dependent DNA-binding response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Sigma-54 dependent DNA-binding response regulator id=3014943 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sigma-54 dependent DNA-binding response regulator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5012..6631
DNA (1620bp) protein (540aa)
ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter substrate-binding protein id=14626481 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter substrate-binding protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6772..7695
DNA (924bp) protein (308aa)
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein id=14626482 bin=bin7_NC10_sister species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gsiC; glutathione transport system permease GsiC
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7696..8598
DNA (903bp) protein (301aa)
gsiD; glutathione transport system permease GsiD; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative peptide ABC transporter permease protein id=3960111 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutathione transport system permease GsiD
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8805..9071
DNA (267bp) protein (89aa)
7Fe ferredoxin id=14626484 bin=bin7_NC10_sister species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
7Fe ferredoxin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
fdxA; ferredoxin
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

9203..9517
DNA (315bp) protein (105aa)
id=14626485 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14626485 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10555..10677
DNA (123bp) protein (41aa)
Acetyl-CoA acetyltransferase-like protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Acetyl-CoA acetyltransferase-like protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=14626486 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10674..11114
DNA (441bp) protein (147aa)
id=14626487 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14626487 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11098..12303
DNA (1206bp) protein (402aa)
CaiB/BaiF family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
CaiB/BaiF family protein id=14626488 bin=bin7_NC10_sister species=Bordetella bronchiseptica genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
CaiB/BaiF family protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12329..14143
DNA (1815bp) protein (605aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
GAF sensor hybrid histidine kinase (EC:2.7.13.3) id=14626489 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14329..14631)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Streptomyces sp. SA3_actF RepID=UPI0001FFFBE3
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14855..15796
DNA (942bp) protein (314aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] id=14626490 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
cimA; alpha-isopropylmalate/homocitrate synthase family transferase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15812..16165
DNA (354bp) protein (118aa)
response regulator receiver protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
response regulator receiver protein id=14626491 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response regulator receiver protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

16464..17186
DNA (723bp) protein (241aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] Tax=RIFCSPLOWO2_02_FULL_Rok
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] id=14626492 bin=bin7_NC10_sister species=Nocardiopsis halophila genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17269..18003
DNA (735bp) protein (245aa)
id=14626493 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14626493 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18234..18881
DNA (648bp) protein (216aa)
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
acetyltransferase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18878..21019
DNA (2142bp) protein (714aa)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
putative two-component hybrid sensor and regulator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21012..22637
DNA (1626bp) protein (542aa)
response receiver sensor histidine kinase response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PAS domain S-box id=14626496 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response receiver sensor histidine kinase response regulator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_10965_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(23562..24395)
DNA (834bp) protein (278aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=15194361 bin=GWC2_NOV_55_46 species=Verrucomicrobium sp. 3C genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
Displaying 22 items

View Taxonomy