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RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_1
unknown

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(246..1031)
DNA (786bp) protein (262aa)
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) id=14627063 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1156..1785)
DNA (630bp) protein (210aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] id=14627064 bin=bin7_NC10_sister species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
siroheme synthase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1795..2277)
DNA (483bp) protein (161aa)
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
transcriptional regulator id=14627065 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Rrf2 family transcriptional regulator
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(2274..3434)
DNA (1161bp) protein (387aa)
polysulfide reductase NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
polysulfide reductase NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14627066 bin=bin7_NC10_sister species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
polysulfide reductase NrfD
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3442..4068)
DNA (627bp) protein (209aa)
Fe-S-cluster-containing hydrogenase subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Fe-S-cluster-containing hydrogenase subunit id=14627067 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Fe-S-cluster-containing hydrogenase subunit
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4591..6222)
DNA (1632bp) protein (544aa)
4Fe-4S ferredoxin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
4Fe-4S ferredoxin id=14627069 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
dsrO is in next gap Karthik Anantharaman (12/7/16)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6226..7815)
DNA (1590bp) protein (530aa)
nitrate reductase gamma subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Nitrate reductase gamma subunit id=14627070 bin=bin7_NC10_sister species=Desulfosporosinus youngiae genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
nitrate reductase subunit gamma
Also contains RsbRD Karthik Anantharaman (12/12/16)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7825..8142)
DNA (318bp) protein (106aa)
sulfur relay protein, TusE/DsrC/DsvC family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
sulfur relay protein, TusE/DsrC/DsvC family id=14627072 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
sulfur relay protein, TusE/DsrC/DsvC family
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8167..9219)
DNA (1053bp) protein (351aa)
dsrB; dissimilatory sulfite reductase subunit B (EC:1.8.99.3); K11181 sulfite reductase, dissimilatory-type beta subunit [EC:1.8.99.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
dsrB; dissimilatory sulfite reductase subunit B (EC:1.8.99.3); K11181 sulfite reductase, dissimilatory-type beta subunit [EC:1.8.99.3] id=14627075 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
dsrB; dissimilatory sulfite reductase subunit B (EC:1.8.99.3)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9222..10637)
DNA (1416bp) protein (472aa)
hydrogensulfite reductase (EC:1.8.99.3); K11180 sulfite reductase, dissimilatory-type alpha subunit [EC:1.8.99.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hydrogensulfite reductase (EC:1.8.99.3)
Dissimilatory sulfite reductase alpha subunit id=3772920 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10654..10947)
DNA (294bp) protein (98aa)
dsrH; DsrH protein; K07237 tRNA 2-thiouridine synthesizing protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Sulfur relay protein TusB/DsrH id=4452250 bin=GWC2_Methylomirabilis_70_24 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dsrH; DsrH protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_19108_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10960..11259)
DNA (300bp) protein (100aa)
dsrF; DsrF protein; K07236 tRNA 2-thiouridine synthesizing protein C Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
dsrF; DsrF protein; K07236 tRNA 2-thiouridine synthesizing protein C id=14626316 bin=bin7_NC10_sister species=unknown genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
dsrF; DsrF protein
Displaying 13 items

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