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RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_1
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1..2208)
DNA (2208bp) protein (736aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=2145144 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2250..2504)
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2615..3403)
DNA (789bp) protein (263aa)
patatin; K07001 NTE family protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Patatin id=3504070 bin=GWF2_OP9-related_38_17 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
patatin
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3463..5043)
DNA (1581bp) protein (527aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CII2_DESK7
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(5047..5817)
DNA (771bp) protein (257aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) RepID=F0R610_BACSH
filamentation induced by cAMP protein fic Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
filamentation induced by cAMP protein fic
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6154..6915)
DNA (762bp) protein (254aa)
truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=2 Tax=Thermoanaerobacter RepID=I9ACI7_9THEO
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(6924..8060)
DNA (1137bp) protein (379aa)
Soluble hydrogenase, small (42 kd) subunit, putative n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAQ7_HELMI
soluble hydrogenase, small (42 kd) subunit Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
soluble hydrogenase, small (42 kd) subunit
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(8099..8440)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IP08_9PLAN
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(8444..9025)
DNA (582bp) protein (194aa)
UPI0003D630AA related cluster n=1 Tax=unknown RepID=UPI0003D630AA
SSU ribosomal protein S9P Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
SSU ribosomal protein S9P
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(9032..9469)
DNA (438bp) protein (146aa)
50S ribosomal protein L13 n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RL13_SYMTH
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rplM; 50S ribosomal protein L13
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(9478..9828)
DNA (351bp) protein (117aa)
50S ribosomal protein L17 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EFF7_CLOPA
ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rplQ; 50S ribosomal protein L17
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(9825..10772)
DNA (948bp) protein (316aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZP0_THEOJ
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(10794..11414)
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W412_DESAS
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rpsD; 30S ribosomal protein S4
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(11414..11803)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=unclassified candidate division OP9 RepID=UPI0003744941
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
30S ribosomal protein S11
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(11810..12193)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Dialister sp. CAG:588 RepID=R7PN53_9FIRM
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
30S ribosomal protein S13
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12212..12325)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=2 Tax=Thermus RepID=G8N9N7_9DEIN
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L36
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12333..12554)
DNA (222bp) protein (74aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Translation initiation factor IF-1 id=4250696 bin=GWF2_OP9_related_35_9 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
translation initiation factor IF-1
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(12548..13312)
DNA (765bp) protein (255aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QKR0_DESB2
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(13293..13943)
DNA (651bp) protein (217aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Adenylate kinase n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KT72_ARCVS
adenylate kinase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(13940..15202)
DNA (1263bp) protein (421aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Protein translocase subunit SecY id=1750048 bin=GWE2_RBX1_39_32 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
preprotein translocase subunit SecY
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(15190..15606)
DNA (417bp) protein (139aa)
50S ribosomal protein L15 n=1 Tax=Clostridium sp. CAG:594 RepID=R6D6I2_9CLOT
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L15
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(15593..16093)
DNA (501bp) protein (167aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
30S ribosomal protein S5 id=1733786 bin=GWD2_RBX1-related_39_127 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
rpsE; 30S ribosomal protein S5
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(16090..16392)
DNA (303bp) protein (101aa)
50S ribosomal protein L18 n=1 Tax=Desulfurispora thermophila RepID=UPI0003603E0C
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rplR; 50S ribosomal protein L18
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(16396..16950)
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RL6_HALOH
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L6
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(16957..17349)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=RS8_CALS8
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
30S ribosomal protein S8
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(17549..18067)
DNA (519bp) protein (173aa)
50S ribosomal protein L5 n=1 Tax=Desmospora sp. 8437 RepID=F5SIC6_9BACL
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L5
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(18069..18380)
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J793_MARPK
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L24
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(18382..18756)
DNA (375bp) protein (125aa)
50S ribosomal protein L14 n=19 Tax=Corynebacterium RepID=D8KKN6_CORPF
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
LSU ribosomal protein L14p (L23e)
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(18722..19069)
DNA (348bp) protein (116aa)
30S ribosomal protein S17 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPM3_9FIRM
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
30S ribosomal protein S17
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_4568_30
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


comp(19050..19241)
DNA (192bp) protein (64aa)
50S ribosomal protein L29 n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C4G8_THEGP
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
50S ribosomal protein L29
Displaying items 1-30 of 53 in total

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