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RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_1
R_WOR_1_46_20, WOR-1, Bacteria

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306..470
DNA (165bp) protein (55aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

681..887
DNA (207bp) protein (69aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

939..1235
DNA (297bp) protein (99aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

1268..2794
DNA (1527bp) protein (509aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(2932..3222)
DNA (291bp) protein (97aa)
coiled-coil 59..98 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
coiled-coil 59..98 id=5512 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(3243..4571)
DNA (1329bp) protein (443aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Dihydrolipoyl dehydrogenase n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1G0_DESRM
dihydrolipoamide dehydrogenase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4573..4932)
DNA (360bp) protein (120aa)
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative uncharacterized protein id=4141605 bin=GWC2_Deltaproteobacteria_56_8 species=Synechococcus sp. PCC 7335 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(4932..5360)
DNA (429bp) protein (143aa)
yqeY; hypothetical protein; K09117 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Uncharacterized protein yqeY id=1853805 bin=GWD2_RBX1-related_39_127 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
yqeY; hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

5451..6374
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037F3DEA
D-alanine--D-alanine ligase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
D-alanine--D-alanine ligase
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

6375..7109
DNA (735bp) protein (245aa)
Polypeptide-transport-associated domain protein FtsQ-type n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B3E2_DESCC
polypeptide-transport-associated domain-containing protein; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
polypeptide-transport-associated domain-containing protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

7169..8224
DNA (1056bp) protein (352aa)
FtsZ; cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Cell division protein FtsZ id=4117122 bin=GWF2_OP9-related_38_17 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
FtsZ; cell division protein FtsZ
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

8472..9509
DNA (1038bp) protein (346aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Methyltransferase domain protein id=1941572 bin=GWD2_RBX1-related_39_127 species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

9506..11380
DNA (1875bp) protein (625aa)
sensor histidine kinase Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative Histidine kinase, contains GAF domain id=1832772 bin=GWE2_Bacteroidetes_42_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
sensor histidine kinase, HAMP domain-containing
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(11377..11859)
DNA (483bp) protein (161aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Response regulator receiver id=4022108 bin=GWF2_OP9_related_35_9 species=Gloeocapsa sp. PCC 73106 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12167..12604
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Campylobacter ureolyticus ACS-301-V-Sch3b RepID=S3XGB7_9PROT
ferric uptake regulator, Fur family; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Fur family transcriptional regulator
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12634..12813
DNA (180bp) protein (60aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12855..14828
DNA (1974bp) protein (658aa)
feoB; ferrous iron transport protein B; K04759 ferrous iron transport protein B Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Small GTP-binding protein id=3159245 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
feoB; ferrous iron transport protein B
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

15001..15648
DNA (648bp) protein (216aa)
Iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=15192164 bin=GWC2_NOV_55_46 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
Iron (metal) dependent repressor
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(15651..16031)
DNA (381bp) protein (127aa)
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Two component transcriptional regulator, winged helix family id=4802009 bin=GWC2_OP3_44_8 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16021..17382)
DNA (1362bp) protein (454aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
multi-component transcriptional regulator, winged helix family Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein id=8266645 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

17481..18983
DNA (1503bp) protein (501aa)
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system protein E (GspE) id=2050228 bin=GWB2_CP_45_9 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
general secretory pathway protein E
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

18970..20202
DNA (1233bp) protein (411aa)
type ii secretion system f domain; K12278 MSHA biogenesis protein MshG Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II secretion system F domain protein id=4948406 bin=GWC2_Nitrospirae_57_13 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
type II secretion system f domain
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

20264..20647
DNA (384bp) protein (128aa)
putative fimbrial protein; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Putative fimbrial protein id=3078993 bin=GWA2_OP3_52_12 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative fimbrial protein
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

20728..21255
DNA (528bp) protein (176aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21252..21650
DNA (399bp) protein (133aa)
Marine sediment metagenome DNA, contig: S06H3_L00991 Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21643..22128
DNA (486bp) protein (162aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

22125..23411
DNA (1287bp) protein (429aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_28
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

23469..25076
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B31137
pilM; putative type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pilM; putative type IV pilus assembly protein PilM
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_29
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

25073..25561
DNA (489bp) protein (163aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
RIFCSPLOWO2_02_FULL_CP_46_20_rifcsplowo2_02_scaffold_1233_30
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

25581..26678
DNA (1098bp) protein (366aa)
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Type II and III secretion system protein id=1978986 bin=GWE2_RBX1_39_32 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
type II and III secretion system protein
Displaying items 1-30 of 47 in total

View Taxonomy