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RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..115)
DNA (114bp) protein (38aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

370..720
DNA (351bp) protein (117aa)
yrrB; TPR repeat-containing protein YrrB
TPR Domain containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TPR Domain containing protein id=12555757 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

692..1552
DNA (861bp) protein (287aa)
id=12555756 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555756 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


1645..1959
DNA (315bp) protein (105aa)
rplU; 50S ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rplU; 50S ribosomal protein L21 id=12555755 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplU; 50S ribosomal protein L21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


1972..2229
DNA (258bp) protein (86aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpmA; 50S ribosomal protein L27 id=12555754 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmA; 50S ribosomal protein L27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2498..3268
DNA (771bp) protein (257aa)
Obg family GTPase CgtA; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
obgE; GTPase ObgE; K03979 GTP-binding protein id=12555753 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Obg family GTPase CgtA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3265..3981
DNA (717bp) protein (239aa)
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12555752 bin=CNBR_ACIDO species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3968..4369
DNA (402bp) protein (134aa)
Iojap-related protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
iojap superfamily protein; K09710 ribosome-associated protein id=12555751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4380..5282
DNA (903bp) protein (301aa)
sigma-54 dependent trancsriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Sigma-54 dependent DNA-binding response regulator id=3714126 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5555..6088
DNA (534bp) protein (178aa)
phosphoribosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
comF; competence protein F id=12555750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyltransferase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6054..6647)
DNA (594bp) protein (198aa)
tmk; dTMP kinase (EC:2.7.4.9)
thymidylate kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
thymidylate kinase id=12555749 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6669..7916)
DNA (1248bp) protein (416aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12555748 bin=CNBR_ACIDO species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate decarboxylase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7958..8611
DNA (654bp) protein (218aa)
ECF subfamily RNA polymerase sigma-24 factor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ECF subfamily RNA polymerase sigma-24 factor id=12555747 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ECF subfamily RNA polymerase sigma-24 factor
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8608..8949
DNA (342bp) protein (114aa)
anti-anti-sigma factor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist id=12555746 bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-anti-sigma factor
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8951..9220
DNA (270bp) protein (90aa)
id=12555745 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9338..11548
DNA (2211bp) protein (737aa)
sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
serine phosphatase id=12557719 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
serine/threonine phosphatase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11556..12179)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WFZ0_9SPHN
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12231..13145)
DNA (915bp) protein (305aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curat
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=12555744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13198..15996)
DNA (2799bp) protein (933aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12555743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
excinuclease ABC subunit A
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16034..16384)
DNA (351bp) protein (117aa)
hypothetical protein; K07090 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Uncharacterized protein id=5032435 bin=GWA2_Elusimicrobia_66_18 species=Gloeocapsa sp. PCC 73106 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16552..16824)
DNA (273bp) protein (91aa)
SWIB/MDM2 domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQD1_NIAKG
SWIB/MDM2 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16933..17442)
DNA (510bp) protein (170aa)
ferritin n=1 Tax=Chlorogloeopsis RepID=UPI000318AAD3
ferritin Dps family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ferritin Dps family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17478..19613)
DNA (2136bp) protein (712aa)
dipeptidyl-peptidase IV (EC:3.4.14.5); K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase S9B dipeptidylpeptidase IV domain protein
Putative dipeptidyl peptidase IV id=4631488 bin=GWF2_Bacteroidetes_49_14 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19639..19809
DNA (171bp) protein (57aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(19804..20319)
DNA (516bp) protein (172aa)
peroxiredoxin n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628548
OsmC family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
OsmC family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20316..21425)
DNA (1110bp) protein (370aa)
Putative transcriptional regulator, GntR family n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FP13_9BURK
multiple substrate aminotransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
aminotransferase class I and II family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(21485..21880)
DNA (396bp) protein (132aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21909..22364
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
hypothetical protein id=12555450 bin=CNBR_ACIDO species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_29
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22374..23375
DNA (1002bp) protein (334aa)
Glycosyl transferase group 1 n=2 Tax=mine drainage metagenome RepID=T1ABM0_9ZZZZ
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glycosyltransferase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5669_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23640..24194
DNA (555bp) protein (185aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Displaying 30 items

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