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RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2..124
DNA (123bp) protein (41aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

128..1093
DNA (966bp) protein (322aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] id=12555618 bin=CNBR_ACIDO species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_1
unknown

Not on your lists

1209..1280
DNA (72bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1314..2291
DNA (978bp) protein (326aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=12555617 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribose-phosphate pyrophosphokinase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


2410..3108
DNA (699bp) protein (233aa)
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ribosomal protein L25, Ctc-form; K02897 large subunit ribosomal protein L25 id=12555616 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3119..3697
DNA (579bp) protein (193aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=12555615 bin=CNBR_ACIDO species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidyl-tRNA hydrolase (EC:3.1.1.29)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


3827..4273
DNA (447bp) protein (149aa)
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 id=12555614 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsF; SSU ribosomal protein S6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


4275..4619
DNA (345bp) protein (115aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 id=12555613 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsR; 30S ribosomal protein S18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


4723..5190
DNA (468bp) protein (156aa)
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 id=12555612 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplI; 50S ribosomal protein L9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5247..6599
DNA (1353bp) protein (451aa)
primary replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] id=12555611 bin=CNBR_ACIDO species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
primary replicative DNA helicase (EC:3.6.1.-)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6611..7732
DNA (1122bp) protein (374aa)
alr; alanine racemase; K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] id=12555610 bin=CNBR_ACIDO species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alr; alanine racemase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7740..8126)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD73
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8486..9877
DNA (1392bp) protein (464aa)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms id=12555609 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA repair protein RadA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9970..11046
DNA (1077bp) protein (359aa)
PilT protein-like Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PilT protein-like id=12555608 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
twitching motility protein PilT
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11055..11816
DNA (762bp) protein (254aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] id=12555607 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-acyl-sn-glycerol-3-phosphate acyltransferase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11818..12990
DNA (1173bp) protein (391aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] Ta
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] id=12555606 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13048..14577
DNA (1530bp) protein (510aa)
gltX2; glutamate--tRNA ligase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glutamyl-tRNA synthetase / glutamate--tRNA(Gln) ligase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=12555605 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gltX2; glutamate--tRNA ligase (EC:6.1.1.17)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14714..15436
DNA (723bp) protein (241aa)
RNA methyltransferase TrmH, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RNA methyltransferase, TrmH family, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] id=12555604 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA methyltransferase TrmH, group 3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15646..17025)
DNA (1380bp) protein (460aa)
Transposase IS4 family protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0XVJ4_9ZZZZ
transposase, IS4 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
transposase, IS4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_2
unknown

Not on your lists

17232..17304
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_3
unknown

Not on your lists

17366..17449
DNA (84bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_4
unknown

Not on your lists

17557..17628
DNA (72bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_5
unknown

Not on your lists

17738..17810
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17947..19146
DNA (1200bp) protein (400aa)
tuf; elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
translation elongation factor Tu id=12555603 bin=CNBR_ACIDO species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tuf; elongation factor Tu
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


19146..19295
DNA (150bp) protein (50aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=12555602 bin=CNBR_ACIDO species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmG; 50S ribosomal protein L33
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_trna_6
unknown

Not on your lists

19309..19381
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19541..19792
DNA (252bp) protein (84aa)
preprotein translocase, SecE subunit; K03073 preprotein translocase subunit SecE Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=12555601 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
preprotein translocase, SecE subunit
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19789..20331
DNA (543bp) protein (181aa)
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG id=12555600 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription antitermination protein nusG
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


20433..20858
DNA (426bp) protein (142aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12555599 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5217_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


21017..21724
DNA (708bp) protein (236aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=12555598 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplA; 50S ribosomal protein L1
Displaying items 1-30 of 53 in total

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