ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

66..1322
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Bdellovibrio exovorus JSS RepID=M4V6K9_9DELT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1379..2785)
DNA (1407bp) protein (469aa)
short chain fatty acid transporter n=1 Tax=Cupriavidus sp. WS RepID=UPI0003797C20
short chain fatty acid transporter; K02106 short-chain fatty acids transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
short chain fatty acid transporter
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2849..3040
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2958..3239)
DNA (282bp) protein (94aa)
Hypothetical conserved protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Hypothetical conserved protein id=14425071 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3283..3588)
DNA (306bp) protein (102aa)
Putative small protein n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B2T7_9DELT
putative helix-turn-helix domain containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
XRE family transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3545..4033)
DNA (489bp) protein (163aa)
Phage-related protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UBU0_9CHRO
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4721..7096)
DNA (2376bp) protein (792aa)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X56_SOLUE
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7093..7590)
DNA (498bp) protein (166aa)
(2Fe-2S)-binding domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X57_SOLUE
(2Fe-2S)-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
(2Fe-2S)-binding protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_trna_2
unknown

Not on your lists

comp(7887..7960)
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_trna_1
unknown

Not on your lists

comp(8100..8171)
DNA (72bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8172..8636)
DNA (465bp) protein (155aa)
S-isoprenylcysteine methyltransferase-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
S-isoprenylcysteine methyltransferase-like protein id=12555679 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
S-isoprenylcysteine methyltransferase-like protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8669..9691)
DNA (1023bp) protein (341aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] id=12555680 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ADP-heptose--LPS heptosyltransferase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9760..10236)
DNA (477bp) protein (159aa)
cytidyltransferase-related domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cytidyltransferase-related domain-containing protein id=12555681 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytidyltransferase-related domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10233..11339)
DNA (1107bp) protein (369aa)
d-beta-d-heptose 7-phosphate kinase (EC:2.7.1.-) id=12555682 bin=CNBR_ACIDO species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribokinase-like domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ribokinase-like domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11333..11944)
DNA (612bp) protein (204aa)
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C38D5
D,D-heptose 1,7-bisphosphate phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
D,D-heptose 1,7-bisphosphate phosphatase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11941..12924)
DNA (984bp) protein (328aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-)
ADP-heptose--LPS heptosyltransferase II (Modular protein) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG18_9BACT
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12963..14633
DNA (1671bp) protein (557aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5); K01916 NAD+ synthase [EC:6.3.1.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BE0_SOLUE
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14704..15570)
DNA (867bp) protein (289aa)
lauroyl/myristoyl acyltransferase (EC:2.3.1.-); K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
lauroyl/myristoyl acyltransferase (EC:2.3.1.-); K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] id=12555685 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lauroyl/myristoyl acyltransferase (EC:2.3.1.-)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15567..16676)
DNA (1110bp) protein (370aa)
tetraacyldisaccharide 4'-kinase (LpxK); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
lipid-A-disaccharide synthase (EC:2.4.1.182) id=12555686 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16699..18030)
DNA (1332bp) protein (444aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) id=12555687 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18079..18690
DNA (612bp) protein (204aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] id=12555688 bin=CNBR_ACIDO species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18691..19086
DNA (396bp) protein (132aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] id=12555688 bin=CNBR_ACIDO species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19115..20308
DNA (1194bp) protein (398aa)
3-phosphoglycerate kinase (EC:2.7.2.3) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3-phosphoglycerate kinase (EC:2.7.2.3) id=12555689 bin=CNBR_ACIDO species=Desulfosporosinus sp. OT genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-phosphoglycerate kinase (EC:2.7.2.3)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20464..21231
DNA (768bp) protein (256aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] id=12555690 bin=CNBR_ACIDO species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tpiA; triosephosphate isomerase (EC:5.3.1.1)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_13731_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21315..21746
DNA (432bp) protein (144aa)
protein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
protein translocase subunit SecG; K03075 preprotein translocase subunit SecG id=12555691 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit SecG
Displaying 25 items

View Taxonomy