ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

109..504
DNA (396bp) protein (132aa)
DNA polymerase subunit beta Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=4834172 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA polymerase subunit beta
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

501..935
DNA (435bp) protein (145aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Uncharacterized protein id=4547808 bin=GWC2_Methylomirabilis_70_24 species=Calothrix parietina genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1081..1305)
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1302..1751)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZPT9_9BACT
PilT protein domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PilT protein domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1787..2002
DNA (216bp) protein (72aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1999..2238)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NIY8_DESAR
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2884..3105)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DUX4_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3222..3521
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3502..3825)
DNA (324bp) protein (108aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Putative uncharacterized protein id=4033451 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Methanoplanus petrolearius genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3847..5379)
DNA (1533bp) protein (511aa)
CRISPR-associated protein Csb2 n=1 Tax=Schlesneria paludicola RepID=UPI000299DFCF
CRISPR-associated protein, GSU0054 family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
CRISPR-associated protein, GSU0054 family
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5392..6789)
DNA (1398bp) protein (466aa)
CRISPR-associated protein Csb1 n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74H40_GEOSL
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
csb1; CRISPR-associated protein Csb1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6782..7618)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J5H2_9RHOB
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7615..10365)
DNA (2751bp) protein (917aa)
CRISPR-associated HD domain protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C522A
CRISPR-associated HD domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cas3-1; CRISPR-associated helicase Cas3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10434..10574)
DNA (141bp) protein (47aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10571..11089)
DNA (519bp) protein (173aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=14429340 bin=bin3_NC10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11381..11713)
DNA (333bp) protein (111aa)
DNA polymerase beta domain-containing protein region Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DNA polymerase beta domain-containing protein region id=24403790 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA polymerase beta domain-containing protein region
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12111..12677
DNA (567bp) protein (189aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12556714 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12755..14620)
DNA (1866bp) protein (622aa)
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] id=12554698 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
oligoendopeptidase F
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14693..14890
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14939..15502
DNA (564bp) protein (188aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15553..16836)
DNA (1284bp) protein (428aa)
Major facilitator superfamily MFS_1 n=2 Tax=Chloroflexus RepID=A9WAF7_CHLAA id=5225037 bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
major facilitator superfamily protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16833..17819)
DNA (987bp) protein (329aa)
Quinone oxidoreductase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NVE5_AZOS1
quinone oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
quinone oxidoreductase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18137..19126
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLP9_SYNFM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19123..20160
DNA (1038bp) protein (346aa)
TRAP C4-dicarboxylate transport system permease subunit DctP Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TRAP dicarboxylate transporter-DctP subunit id=4952629 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20157..22013
DNA (1857bp) protein (619aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLP7_SYNFM id=5225028 bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TRAP dicarboxylate transporter subunit DctM Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22037..22975)
DNA (939bp) protein (313aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Pseudomonas sp. GM33 RepID=J2R5R3_9PSED
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
lactate dehydrogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23007..24254)
DNA (1248bp) protein (416aa)
Dicarboxylate carrier MatC domain protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NNI7_9FIRM
di-/tricarboxylate transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
di-/tricarboxylate transporter
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24251..25681)
DNA (1431bp) protein (477aa)
MmgE/PrpD family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9X2_STAND
MmgE/PrpD family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
MmgE/PrpD family protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_29
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(25881..26585)
DNA (705bp) protein (235aa)
Halocyanin n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0JB50_9EURY
hcpH; halocyanin Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hcpH; halocyanin
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_10843_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26590..28029)
DNA (1440bp) protein (480aa)
Polyvinyl-alcohol dehydrogenase n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EMT6_9NOCA
polyvinyl-alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
polyvinyl-alcohol dehydrogenase
Displaying items 1-30 of 40 in total

View Taxonomy